(Q42553018)

English

Effect of DNA extraction procedure, repeated extraction and ethidium monoazide (EMA)/propidium monoazide (PMA) treatment on overall DNA yield and impact on microbial fingerprints for bacteria, fungi and archaea in a reference soil

scientific article published on September 2015

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

Effect of DNA extraction procedure, repeated extraction and ethidium monoazide (EMA)/propidium monoazide (PMA) treatment on overall DNA yield and impact on microbial fingerprints for bacteria, fungi and archaea in a reference soil (English)

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

Andreas Otto Wagner

1

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26339125%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

author name string

Nadine Praeg

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26339125%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Christoph Reitschuler

3

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26339125%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Paul Illmer

4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26339125%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

publication date

1 September 2015

1 reference

Europe PubMed Central

PMC publication ID

2 November 2017

Applied Soil Ecology

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26339125%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

93

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26339125%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

56-64

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26339125%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Cultivation of moonmilk-born non-extremophilic Thaum and Euryarchaeota in mixed culture.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Recent developments in the use of viability dyes and quantitative PCR in the food microbiology field

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Advances in monitoring environmental microbes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Progress in understanding preferential detection of live cells using viability dyes in combination with DNA amplification

1 reference

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28 May 2018

Viable real-time PCR in environmental samples: can all data be interpreted directly?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Experimental discrimination and molecular characterization of the extracellular soil DNA fraction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Simple DNA extraction protocol for a 16S rDNA study of bacterial diversity in tropical landfarm soil used for bioremediation of oil waste

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Application of denaturing high-performance liquid chromatography in microbial ecology: fermentor sludge, compost, and soil community profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Novel approaches toward preferential detection of viable cells using nucleic acid amplification techniques

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Selective removal of DNA from dead cells of mixed bacterial communities by use of ethidium monoazide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Effects of DNA polymer length on its adsorption to soils

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Use of ethidium monoazide and PCR in combination for quantification of viable and dead cells in complex samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Detecting predation and scavenging by DNA gut-content analysis: a case study using a soil insect predator-prey system.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

The microbial DNA cycle in soil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Use of polymerase chain reaction and electroporation of Escherichia coli to monitor the persistence of extracellular plasmid DNA introduced into natural soils.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Alignment of Escherichia coli K12 DNA sequences to a genomic restriction map.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

28 May 2018

Optimization, validation, and application of a real-time PCR protocol for quantification of viable bacterial cells in municipal sewage sludge and biosolids using reporter genes and Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

16 August 2018

Primer evaluation and adaption for cost-efficient SYBR Green-based qPCR and its applicability for specific quantification of methanogens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

16 August 2018

Propidium monoazide does not fully inhibit the detection of dead Campylobacter on broiler chicken carcasses by qPCR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

16 August 2018

Can dead bacterial cells be defined and are genes expressed after cell death?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

16 August 2018

Environmental DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

16 August 2018

Effects of various fatty acid amendments on a microbial digester community in batch culture.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

16 August 2018

Persistence of DNA of Gaeumannomyces graminis var. tritici in soil as measured by a DNA-based assay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

16 August 2018

Removal of free extracellular DNA from environmental samples by ethidium monoazide and propidium monoazide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

16 August 2018

Thermodynamic analysis of product formation in mesophilic acidogenesis of lactose

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4461152

16 August 2018

Quantification of total viable bacteria on fish fillets by using ethidium bromide monoazide real-time polymerase chain reaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/26339125

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effect of pH and ionic strength on the spectrophotometric assessment of nucleic acid purity

1 reference

https://pubmed.ncbi.nlm.nih.gov/26339125

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The effect of various environmental factors on the ethidium monazite and quantitative PCR method to detect viable bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/26339125

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of different methods for the isolation and purification of total community DNA from soil

1 reference

https://pubmed.ncbi.nlm.nih.gov/26339125

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.APSOIL.2015.04.005

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26339125%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26339125%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26339125%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

ResearchGate publication ID

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