(Q42590018)

English

Computational detection of allergenic proteins attains a new level of accuracy with in silico variable-length peptide extraction and machine learning

scientific article published on 23 August 2006

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

Computational detection of allergenic proteins attains a new level of accuracy with in silico variable-length peptide extraction and machine learning (English)

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

machine learning

0 references

computational biology

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

author name string

Soeria-Atmadja D

1

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

Lundell T

2

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

Gustafsson MG

3

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

Hammerling U

4

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

language of work or name

0 references

publication date

23 August 2006

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

34

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

13

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

3779-3793

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

describes a project that uses

1 reference

Europe PubMed Central

18 June 2022

https://europepmc.org/article/PMC/1540723

based on heuristic

inferred from PubMed Central ID database lookup

Reduced allergenic potency of VR9-1, a mutant of the major shrimp allergen Pen a 1 (tropomyosin).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Assessment of sequence homology and cross-reactivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Assessing genetically modified crops to minimize the risk of increased food allergy: a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Structural, biological, and evolutionary relationships of plant food allergens sensitizing via the gastrointestinal tract.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Allermatch, a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

In vitro assays for the diagnosis of IgE-mediated disorders

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

A classification of plant food allergens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Assessment of the safety of foods derived from genetically modified (GM) crops

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Predicting allergenic proteins using wavelet transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Statistical evaluation of local alignment features predicting allergenicity using supervised classification algorithms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Allergen databases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Assessment of protein allergenicity on the basis of immune reactivity: animal models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

SDAP: database and computational tools for allergenic proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Screening of transgenic proteins expressed in transgenic food crops for the presence of short amino acid sequences identical to potential, IgE - binding linear epitopes of allergens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Molecular aspects of allergy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Data mining of sequences and 3D structures of allergenic proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Allergies to cross-reactive plant proteins. Latex-fruit syndrome is comparable with pollen-food allergy syndrome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Sequence analysis for assessing potential allergenicity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Current understanding of cross-reactivity of food allergens and pollen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Atopic allergens of plant foods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Cross-reactivity of plant and animal allergens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

The role of immunoglobulin E in allergy and asthma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

A revised nomenclature for allergy. An EAACI position statement from the EAACI nomenclature task force

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Cross-reactivity of IgE antibodies to allergens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Allergy and allergic diseases. Second of two parts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Flexible sequence similarity searching with the FASTA3 program package

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Tropomyosin: an invertebrate pan-allergen

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Identification and mutational analysis of the immunodominant IgE binding epitopes of the major peanut allergen Ara h 2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Mapping and mutational analysis of the IgE-binding epitopes on Ara h 1, a legume vicilin protein and a major allergen in peanut hypersensitivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Assessment of the allergenic potential of foods derived from genetically engineered crop plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

Sequence analysis of peptides bound to MHC class II molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

28 May 2018

[Development of Allergen Database for Food Safety (ADFS): an integrated database to search allergens and predict allergenicity].

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

16 August 2018

External cross-validation for unbiased evaluation of protein family detectors: application to allergens.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

16 August 2018

Supervised identification of allergen-representative peptides for in silico detection of potentially allergenic proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

16 August 2018

Prediction of food protein allergenicity: a bioinformatic learning systems approach.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

16 August 2018

Bioinformatic methods for allergenicity assessment using a comprehensive allergen database.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

16 August 2018

Recognition of core and flanking amino acids of MHC class II-bound peptides by the T cell receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

16 August 2018

Increase in the prevalence of allergen skin sensitization in successive birth cohorts.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

16 August 2018

Pollen allergens are restricted to few protein families and show distinct patterns of species distribution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

1 December 2018

Structural relatedness of plant food allergens with specific reference to cross-reactive allergens: An in silico analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1540723

1 December 2018

The value of short amino acid sequence matches for prediction of protein allergenicity

1 reference

https://pubmed.ncbi.nlm.nih.gov/16977698

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Patients with anaphylaxis to pea can have peanut allergy caused by cross-reactive IgE to vicilin (Ara h 1)

1 reference

https://pubmed.ncbi.nlm.nih.gov/16977698

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Allergenicity prediction by protein sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/16977698

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Non-self-discrimination as a driving concept in the identification of an immunodominant HMW-MAA epitopic peptide sequence by autoantibodies from melanoma cancer patients

1 reference

https://pubmed.ncbi.nlm.nih.gov/16977698

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Discrepancies between the skin test and IgE antibody assays: Study of histamine release, complement activation in vitro, and occurrence of allergen-specific IgG

1 reference

https://pubmed.ncbi.nlm.nih.gov/16977698

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Allergen nomenclature. IUIS/WHO Allergen Nomenclature Subcommittee

1 reference

https://pubmed.ncbi.nlm.nih.gov/16977698

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The distribution of total and specific serum IgE in the European Community Respiratory Health Survey

1 reference

https://pubmed.ncbi.nlm.nih.gov/16977698

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The use of amino acid sequence alignments to assess potential allergenicity of proteins used in genetically modified foods

1 reference

https://pubmed.ncbi.nlm.nih.gov/16977698

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence databases for assessing the potential allergenicity of proteins used in transgenic foods

1 reference

https://pubmed.ncbi.nlm.nih.gov/16977698

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Naturally processed peptides from HLA-DQ7 (alpha1*0501-beta1*0301): influence of both alpha and beta chain polymorphism in the HLA-DQ peptide binding specificity

1 reference

https://pubmed.ncbi.nlm.nih.gov/16977698

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based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKL467

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

3 November 2017

ResearchGate publication ID

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