(Q42595519)

3 November 2017

1 reference

title

DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI. (English)

1 reference

3 November 2017

Yongchao Liu

1

1 reference

PMCID

3072957

3 November 2017

Bertil Schmidt

series ordinal

2

1 reference

PMCID

3072957

3 November 2017

Douglas L Maskell

series ordinal

3

1 reference

3 November 2017

29 March 2011

1 reference

3 November 2017

1 reference

3 November 2017

12

1 reference

3 November 2017

85

1 reference

Creative Commons Attribution 2.0 Generic

3 November 2017

start time

29 March 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-12-85

0 references

cites work

A parallel algorithm for error correction in high-throughput short-read data on CUDA-enabled graphics hardware

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

Correction of sequencing errors in a mixed set of reads

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

CUDASW++2.0: enhanced Smith-Waterman protein database search on CUDA-enabled GPUs based on SIMT and virtualized SIMD abstractions

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

De novo assembly of human genomes with massively parallel short read sequencing

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

SHREC: a short-read error correction method

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

ABySS: a parallel assembler for short read sequence data

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

ALLPATHS: de novo assembly of whole-genome shotgun microreads

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

Short read fragment assembly of bacterial genomes

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

The Atlas genome assembly system

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

PCAP: a whole-genome assembly program

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

ARACHNE: a whole-genome shotgun assembler

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

An Eulerian path approach to DNA fragment assembly

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

A whole-genome assembly of Drosophila

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

A fast hybrid short read fragment assembly algorithm.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

Extending assembly of short DNA sequences to handle error.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

Assembling millions of short DNA sequences using SSAKE.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3072957

High-throughput gene mapping in Caenorhabditis elegans

16 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-12-85

21 January 2018

Identifiers

DOI

10.1186/1471-2105-12-85

1 reference

3 November 2017

journals/bmcbi/LiuSM11

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

3 November 2017

1 reference

PMCID

3072957