(Q42599486)

3 November 2017

title

Thermoirreversible and thermoreversible promoter opening by two Escherichia coli RNA polymerase holoenzymes (English)

1 reference

3 November 2017

Thermoirreversible and Thermoreversible Promoter Opening by Two Escherichia coli RNA Polymerase Holoenzymes (English)

1 reference

https://api.crossref.org/works/10.1074/JBC.M304604200

3 January 2024

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12754208

3 January 2024

promoter

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12754208

3 January 2024

1 reference

https://api.crossref.org/works/10.1074/JBC.M304604200

3 January 2024

1 reference

https://api.crossref.org/works/10.1074/JBC.M304604200

3 January 2024

author name string

Masood Kamali-Moghaddam

series ordinal

1

1 reference

3 November 2017

E. Peter Geiduschek

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12754208

3 January 2024

language of work or name

English

0 references

publication date

15 May 2003

1 reference

full work available at URL

3 November 2017

number of pages

9

1 reference

based on heuristic

inferred from page(s)

http://www.jbc.org/article/S0021925820842367/pdf

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12754208

https://api.elsevier.com/content/article/PII:S0021925820842367?httpAccept=text/xml

3 January 2024

1 reference

https://api.crossref.org/works/10.1074/JBC.M304604200

https://api.elsevier.com/content/article/PII:S0021925820842367?httpAccept=text/plain

3 January 2024

1 reference

https://api.crossref.org/works/10.1074/JBC.M304604200

https://syndication.highwire.org/content/doi/10.1074/jbc.M304604200

3 January 2024

1 reference

https://api.crossref.org/works/10.1074/JBC.M304604200

Journal of Biological Chemistry

3 January 2024

published in

1 reference

3 November 2017

volume

278

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3 November 2017

issue

32

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3 November 2017

page(s)

29701-29709

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Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

3 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Structural basis of transcription initiation: an RNA polymerase holoenzyme-DNA complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Structural organization of the RNA polymerase-promoter open complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Differential melting of the transcription start site associated with changes in RNA polymerase-promoter contacts in initiating transcription complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

The kinetics of sigma subunit directed promoter recognition by E. coli RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Intermediates in the formation of the open complex by RNA polymerase holoenzyme containing the sigma factor sigma 32 at the groE promoter.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Structural kinetics of transcription activation at the malT promoter of Escherichia coli by UV laser footprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Conserved region 3 of Escherichia coli final sigma70 is implicated in the process of abortive transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Promoter clearance and escape in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

An Escherichia coli RNA polymerase defective in transcription due to its overproduction of abortive initiation products

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Changing the mechanism of transcriptional activation by phage lambda repressor

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Mechanism and control of transcription initiation in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Kinetics and mechanism of the interaction of Escherichia coli RNA polymerase with the λPR promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Temperature dependence of the rate constants of the Escherichia coli RNA polymerase-lambda PR promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Quantitative analysis of multiple-hit footprinting studies to characterize DNA conformational changes in protein-DNA complexes: application to DNA opening by Esigma70 RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Positive activation of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Changes in the DNA structure of the lac UV5 promoter during formation of an open complex with Escherichia coli RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

14 Kinetic studies on promoter-RNA polymerase complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

The mechanism of transcriptional activation by the topologically DNA-linked sliding clamp of bacteriophage T4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

T4 late transcripts are initiated near a conserved DNA sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Defining a bacteriophage T4 late promoter: absence of a "-35" region

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Structure and function of bacterial sigma factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Core-sigma interaction: probing the interaction of the bacteriophage T4 gene 55 promoter recognition protein with E.coli RNA polymerase core

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Mutational and functional analysis of a segment of the sigma family bacteriophage T4 late promoter recognition protein gp55.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Dual targets of a transcriptional activator that tracks on DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Activator-sigma interaction: A hydrophobic segment mediates the interaction of a sigma family promoter recognition protein with a sliding clamp transcription activator.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Temperature-dependence of open-complex formation at two Escherichia coli promoters with extended -10 sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Thermal energy requirement for strand separation during transcription initiation: the effect of supercoiling and extended protein DNA contacts

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Open complex formation during transcription initiation at the Escherichia coli galP1 promoter: the role of the RNA polymerase alpha subunit at promoters lacking an UP-element

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Different thermal energy requirement for open complex formation by Escherichia coli RNA polymerase at two related promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Sigma competition: the contest between bacteriophage T4 middle and late transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Transcriptional activation by a DNA-tracking protein: structural consequences of enhancement at the T4 late promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Bacteriophage T4 MotA and AsiA proteins suffice to direct Escherichia coli RNA polymerase to initiate transcription at T4 middle promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Structure of the bacterial RNA polymerase promoter specificity sigma subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Substitutions in bacteriophage T4 AsiA and Escherichia coli sigma(70) that suppress T4 motA activation mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

The MotA transcription factor from bacteriophage T4 contains a novel DNA-binding domain: the 'double wing' motif

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

The bacteriophage T4 transcription activator MotA interacts with the far-C-terminal region of the sigma70 subunit of Escherichia coli RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Solution structure and stability of the anti-sigma factor AsiA: implications for novel functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

The organization of open complexes between Escherichia coli RNA polymerase and DNA fragments carrying promoters either with or without consensus -35 region sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

A mutant RNA polymerase that forms unusual open promoter complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Stimulation of open complex formation by nicks and apurinic sites suggests a role for nucleation of DNA melting in Escherichia coli promoter function

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Conserved regions 4.1 and 4.2 of sigma(70) constitute the recognition sites for the anti-sigma factor AsiA, and AsiA is a dimer free in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

Interaction of T4 AsiA with its target sites in the RNA polymerase sigma70 subunit leads to distinct and opposite effects on transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M304604200

RNA polymerase-promoter interactions: the comings and goings of RNA polymerase

21 January 2018

series ordinal

9

1 reference

https://api.crossref.org/works/10.1074/JBC.M304604200

3 January 2024

Identifiers

1 reference

3 November 2017

1 reference