(Q42658710)

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Resequencing studies of nonmodel organisms using closely related reference genomes: optimal experimental designs and bioinformatics approaches for population genomics.

scientific article published on April 2014

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24795998%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

Resequencing studies of nonmodel organisms using closely related reference genomes: optimal experimental designs and bioinformatics approaches for population genomics (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24795998%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

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Sebastian E Ramos-Onsins

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24795998%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

1

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17 March 2020

Miguel Perez-Enciso

3

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17 March 2020

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B Nevado

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4 November 2017

M Perez-Enciso

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4 November 2017

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1 April 2014

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17 March 2020

Molecular Ecology

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17 March 2020

23

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17 March 2020

7

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17 March 2020

1764-1779

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17 March 2020

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

1 reference

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Rapid SNP discovery and genetic mapping using sequenced RAD markers

1 reference

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Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

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Marker density and read depth for genotyping populations using genotyping-by-sequencing

1 reference

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Molecular evolutionary and population genomic analysis of the nine-spined stickleback using a modified restriction-site-associated DNA tag approach

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Population genomics based on low coverage sequencing: how low should we go?

1 reference

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21 January 2018

Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization

1 reference

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Assessing the accuracy and power of population genetic inference from low-pass next-generation sequencing data

1 reference

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21 January 2018

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

1 reference

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

1 reference

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21 January 2018

Applications of next generation sequencing in molecular ecology of non-model organisms

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Neutrality tests for sequences with missing data

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Quantifying population genetic differentiation from next-generation sequencing data

1 reference

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21 January 2018

The next generation of molecular markers from massively parallel sequencing of pooled DNA samples

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping.

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

The effect of RAD allele dropout on the estimation of genetic variation within and between populations.

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Sequencing studies in human genetics: design and interpretation.

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

A flexible forward simulator for populations subject to selection and demography

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Population genomic analysis of model and nonmodel organisms using sequenced RAD tags

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

ART: a next-generation sequencing read simulator.

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data.

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

SNP detection and genotyping from low-coverage sequencing data on multiple diploid samples

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Inference of human population history from individual whole-genome sequences

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

SNP detection for massively parallel whole-genome resequencing

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Low-coverage sequencing: implications for design of complex trait association studies

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Estimation of allele frequencies from high-coverage genome-sequencing projects

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Applications of next-generation sequencing to phylogeography and phylogenetics

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Next generation analytic tools for large scale genetic epidemiology studies of complex diseases

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Quantifying single nucleotide variant detection sensitivity in exome sequencing

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Genomic scans for selective sweeps using SNP data

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Genotype and SNP calling from next-generation sequencing data

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

SNP calling, genotype calling, and sample allele frequency estimation from New-Generation Sequencing data

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Extremely low-coverage sequencing and imputation increases power for genome-wide association studies

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Population genetic inference from genomic sequence variation

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Great ape genetic diversity and population history

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs.

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Inferring phylogenies from RAD sequence data

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

A new approach for using genome scans to detect recent positive selection in the human genome

1 reference

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21 January 2018

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives

1 reference

https://api.crossref.org/works/10.1111%2FMEC.12693

21 January 2018

Identifiers

10.1111/MEC.12693

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24795998%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24795998%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

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