(Q42728993)

5 November 2017

Codon-based detection of positive selection can be biased by heterogeneous distribution of polar amino acids along protein sequences (English)

1 reference

5 November 2017

Xuhua Xia

1

1 reference

5 November 2017

Sudhir Kumar

series ordinal

2

1 reference

5 November 2017

1 January 2006

1 reference

Computational systems bioinformatics. Computational Systems Bioinformatics Conference

5 November 2017

1 reference

5 November 2017

335-340

1 reference

Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

5 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Determinants of adaptive evolution at the molecular level: the extended complexity hypothesis

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Excess of amino acid substitutions relative to polymorphism between X-linked duplications in Drosophila melanogaster.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Adaptive Evolution of MRG, a Neuron-Specific Gene Family Implicated in Nociception

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Rapidly evolving genes in human. I. The glycophorins and their possible role in evading malaria parasites

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

DAMBE: software package for data analysis in molecular biology and evolution

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Statistical methods for detecting molecular adaptation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

What amino acid properties affect protein evolution?

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Evolution of the Zfx and Zfy genes: rates and interdependence between the genes

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Unbiased estimation of the rates of synonymous and nonsynonymous substitution

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

A codon-based model of nucleotide substitution for protein-coding DNA sequences

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Amino acid difference formula to help explain protein evolution

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Positive Darwinian selection promotes charge profile diversity in the antigen-binding cleft of class I major-histocompatibility-complex molecules

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

The rapid generation of mutation data matrices from protein sequences

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Two types of amino acid substitutions in protein evolution

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Average allozyme heterozygosity in vertebrates correlates with Ka/Ks measured in the human-mouse lineage

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

The spectrum of human rhodopsin disease mutations through the lens of interspecific variation

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

The genomic rate of adaptive amino acid substitution in Drosophila.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Widespread adaptive evolution in the human immunodeficiency virus type 1 genome

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Understanding human disease mutations through the use of interspecific genetic variation

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3090040

Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17369652

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A method for detecting positive selection at single amino acid sites

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17369652

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Variation in the pattern of synonymous and nonsynonymous difference between two fungal genomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17369652

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

1 reference

5 November 2017

PubMed publication ID

17369652

1 reference