(Q42756238)

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Gramicidin A backbone and side chain dynamics evaluated by molecular dynamics simulations and nuclear magnetic resonance experiments. II: nuclear magnetic resonance experiments

scientific article published on 16 May 2011

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scholarly article

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1 February 2020

Gramicidin A backbone and side chain dynamics evaluated by molecular dynamics simulations and nuclear magnetic resonance experiments. II: nuclear magnetic resonance experiments (English)

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1 February 2020

7

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1 February 2020

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Vitaly V Vostrikov

1

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1 February 2020

Hong Gu

2

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1 February 2020

Helgi I Ingólfsson

3

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1 February 2020

James F Hinton

4

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1 February 2020

Olaf S Andersen

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1 February 2020

Benoît Roux

6

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1 February 2020

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16 May 2011

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1 February 2020

Journal of Physical Chemistry B

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1 February 2020

115

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1 February 2020

22

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1 February 2020

7427-7432

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1 February 2020

describes a project that uses

molecular dynamics simulation

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based on heuristic

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Gramicidin A backbone and side chain dynamics evaluated by molecular dynamics simulations and nuclear magnetic resonance experiments. I: molecular dynamics simulations

1 reference

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The preference of tryptophan for membrane interfaces: insights from N-methylation of tryptophans in gramicidin channels

1 reference

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Optimisation of NMR dynamic models I. Minimisation algorithms and their performance within the model-free and Brownian rotational diffusion spaces

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Bilayer thickness and membrane protein function: an energetic perspective.

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Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences

1 reference

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27 May 2018

Gramicidin channels

1 reference

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(1)H/(15)N heteronuclear NMR spectroscopy shows four dynamic domains for phospholamban reconstituted in dodecylphosphocholine micelles.

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Structure of gramicidin a in a lipid bilayer environment determined using molecular dynamics simulations and solid-state NMR data

1 reference

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Structures of gramicidins A, B, and C incorporated into sodium dodecyl sulfate micelles

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Structure and dynamics of micelle-bound neuropeptide Y: comparison with unligated NPY and implications for receptor selection

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Estimation of dynamic parameters from NMR relaxation data using the Lipari-Szabo model-free approach and Bayesian statistical methods

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Macromolecular structural elucidation with solid-state NMR-derived orientational constraints

1 reference

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Comparison of backbone and tryptophan side-chain dynamics of reduced and oxidized Escherichia coli thioredoxin using 15N NMR relaxation measurements.

1 reference

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Comparison of the backbone dynamics of a folded and an unfolded SH3 domain existing in equilibrium in aqueous buffer.

1 reference

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27 May 2018

2H NMR determination of the global correlation time of the gramicidin channel in a lipid bilayer

1 reference

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Correlations between function and dynamics: time scale coincidence for ion translocation and molecular dynamics in the gramicidin channel backbone

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Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme

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Sodium ion binding in the gramicidin A channel. Solid-state NMR studies of the tryptophan residues

1 reference

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Conformation states of gramicidin A along the pathway to the formation of channels in model membranes determined by 2D NMR and circular dichroism spectroscopy

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Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation

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Helix sense of gramicidin channels as a "nonlocal" function of the primary sequence.

1 reference

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Orientations of the tryptophan 9 and 11 side chains of the gramicidin channel based on deuterium nuclear magnetic resonance spectroscopy

1 reference

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The gramicidin A transmembrane channel: a proposed pi(L,D) helix

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Amino acid sequence modulation of gramicidin channel function: effects of tryptophan-to-phenylalanine substitutions on the single-channel conductance and duration

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1 reference

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Spectroscopic studies on the conformation of gramicidin A'. Evidence for a new helical conformation

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inferred from PubMed ID database lookup

Tryptophan dynamics and structural refinement in a lipid bilayer environment: solid state NMR of the gramicidin channel

1 reference

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1 reference

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1 reference

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Structural Determinants of Protein Dynamics: Analysis of 15N NMR Relaxation Measurements for Main-Chain and Side-Chain Nuclei of Hen Egg White Lysozyme

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Gramicidin channel function does not depend on phospholipid chirality

1 reference

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1 reference

https://pubmed.ncbi.nlm.nih.gov/21574558

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1021/JP200906Y

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1 February 2020

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1 February 2020

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1 February 2020

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