(Q42874596)

9 November 2017

Detecting amino acid sites under positive selection and purifying selection (English)

1 reference

9 November 2017

2

1 reference

9 November 2017

Tim Massingham

1

1 reference

PMCID

1449526

9 November 2017

language of work or name

English

0 references

publication date

16 January 2005

1 reference

9 November 2017

10

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inferred from page(s)

published in

Genetics

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9 November 2017

169

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9 November 2017

3

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9 November 2017

1753-1762

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Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

9 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

New Methods for Detecting Positive Selection at Single Amino Acid Sites

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Statistical methods for detecting molecular adaptation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Codon-substitution models for heterogeneous selection pressure at amino acid sites

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

PAML: a program package for phylogenetic analysis by maximum likelihood

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Maximum-Likelihood Models for Combined Analyses of Multiple Sequence Data

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

A codon-based model of nucleotide substitution for protein-coding DNA sequences

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Adaptive protein evolution at the Adh locus in Drosophila

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Bayesian estimation of positively selected sites

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Pandit: a database of protein and associated nucleotide domains with inferred trees

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Accuracy and power of bayes prediction of amino acid sites under positive selection

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Maximum likelihood estimation on large phylogenies and analysis of adaptive evolution in human influenza virus A.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Statistical tests of models of DNA substitution.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Statistical tests of gamma-distributed rate heterogeneity in models of sequence evolution in phylogenetics

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449526

Simulation study of the reliability and robustness of the statistical methods for detecting positive selection at single amino acid sites

3 November 2018

1 reference

12 December 2020

A method for detecting positive selection at single amino acid sites

1 reference

12 December 2020

Pervasive adaptive evolution in mammalian fertilization proteins

1 reference

12 December 2020

Comparison of maximum statistics for hypothesis testing when a nuisance parameter is present only under the alternative

1 reference

12 December 2020

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

1 reference

12 December 2020

10.1534/GENETICS.104.032144

Identifiers

DOI

1 reference

9 November 2017

1 reference

9 November 2017

1 reference

PMCID

1449526