(Q42947445)

English

Competition between the RNA transcript and the nontemplate DNA strand during R-loop formation in vitro: a nick can serve as a strong R-loop initiation site

scientific article published on January 2010

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Competition between the RNA transcript and the nontemplate DNA strand during R-loop formation in vitro: a nick can serve as a strong R-loop initiation site (English)

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

author name string

Deepankar Roy

1

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Zheng Zhang

2

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Zhengfei Lu

3

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Chih-Lin Hsieh

4

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Michael R Lieber

5

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

language of work or name

0 references

publication date

1 January 2010

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Molecular and Cellular Biology

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

30

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

1

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

146-159

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

G clustering is important for the initiation of transcription-induced R-loops in vitro, whereas high G density without clustering is sufficient thereafter

1 reference

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The THP1-SAC3-SUS1-CDC31 complex works in transcription elongation-mRNA export preventing RNA-mediated genome instability.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798282

27 May 2018

Depletion of RNase HI activity in Escherichia coli lacking DNA topoisomerase I leads to defects in DNA supercoiling and segregation.

1 reference

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27 May 2018

Human capping enzyme promotes formation of transcriptional R loops in vitro

1 reference

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Different physiological relevance of yeast THO/TREX subunits in gene expression and genome integrity

1 reference

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27 May 2018

The RNA binding protein RNPS1 alleviates ASF/SF2 depletion-induced genomic instability

1 reference

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27 May 2018

Mechanism of R-loop formation at immunoglobulin class switch sequences

1 reference

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27 May 2018

Sequence dependence of chromosomal R-loops at the immunoglobulin heavy-chain Smu class switch region

1 reference

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Detection of chromatin-associated single-stranded DNA in regions targeted for somatic hypermutation.

1 reference

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Cotranscriptional processes and their influence on genome stability.

1 reference

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Downstream boundary of chromosomal R-loops at murine switch regions: implications for the mechanism of class switch recombination

1 reference

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Loss of splicing factor ASF/SF2 induces G2 cell cycle arrest and apoptosis, but inhibits internucleosomal DNA fragmentation

1 reference

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27 May 2018

Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability

1 reference

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27 May 2018

Influence of switch region length on immunoglobulin class switch recombination

1 reference

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27 May 2018

Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA

1 reference

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27 May 2018

Cotranscriptionally Formed DNA:RNA Hybrids Mediate Transcription Elongation Impairment and Transcription-Associated Recombination

1 reference

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27 May 2018

R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells

1 reference

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27 May 2018

Transcription and double-strand breaks induce similar mitotic recombination events in Saccharomyces cerevisiae.

1 reference

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27 May 2018

RNA:DNA complex formation upon transcription of immunoglobulin switch regions: implications for the mechanism and regulation of class switch recombination

1 reference

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27 May 2018

Replacement of germ-line epsilon promoter by gene targeting alters control of immunoglobulin heavy chain class switching

1 reference

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27 May 2018

DNA sequences at immunoglobulin switch region recombination sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798282

27 May 2018

Transcription induces the formation of a stable RNA.DNA hybrid in the immunoglobulin alpha switch region.

1 reference

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27 May 2018

C mu-containing transcripts initiate heterogeneously within the IgH enhancer region and contain a novel 5'-nontranslatable exon

1 reference

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27 May 2018

Structure and expression of germ line immunoglobulin gamma 2b transcripts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2798282

27 May 2018

Specificity of immunoglobulin heavy chain switch correlates with activity of germline heavy chain genes prior to switching.

1 reference

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27 May 2018

Supercoiling of the DNA template during transcription

1 reference

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27 May 2018

Induction of RNA-stabilized DMA conformers by transcription of an immunoglobulin switch region

1 reference

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27 May 2018

DNA topoisomerases regulate R-loop formation during transcription of the rrnB operon in Escherichia coli.

1 reference

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27 May 2018

Hypernegative supercoiling inhibits growth by causing RNA degradation

1 reference

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16 August 2018

Two levels of protection for the B cell genome during somatic hypermutation.

1 reference

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The functional response of upstream DNA to dynamic supercoiling in vivo

1 reference

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New talents for an old acquaintance: the SR protein splicing factor ASF/SF2 functions in the maintenance of genome stability.

1 reference

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An evolutionarily conserved target motif for immunoglobulin class-switch recombination

1 reference

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16 August 2018

RNase HI overproduction is required for efficient full-length RNA synthesis in the absence of topoisomerase I in Escherichia coli.

1 reference

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Effects of RNA polymerase modifications on transcription-induced negative supercoiling and associated R-loop formation

1 reference

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Transcription-driven supercoiling of DNA: direct biochemical evidence from in vitro studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/19841062

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stability and Properties of Double and Triple Helices: Dramatic Effects of RNA or DNA Backbone Composition

1 reference

https://pubmed.ncbi.nlm.nih.gov/19841062

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The influence of transcriptional orientation on endogenous switch region function

1 reference

https://pubmed.ncbi.nlm.nih.gov/19841062

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/MCB.00897-09

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

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