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Fine-grained annotation and classification of de novo predicted LTR retrotransposons.
scientific article published on November 2009
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scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
title
Fine-grained annotation and classification of de novo predicted LTR retrotransposons
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
main subject
retrotransposon
0 references
author
Sascha Steinbiss
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
Ute Willhoeft
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
author name string
Gordon Gremme
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
Stefan Kurtz
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
language of work or name
English
0 references
publication date
1 November 2009
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
published in
Nucleic Acids Research
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
volume
37
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
issue
21
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
page(s)
7002-7013
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
cites work
Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Widespread evidence for horizontal transfer of transposable elements across Drosophila genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
AnnotationSketch: a genome annotation drawing library
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Ensembl 2009
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
GtRNAdb: a database of transfer RNA genes detected in genomic sequence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
FlyBase: enhancing Drosophila Gene Ontology annotations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Keeping active endogenous retroviral-like elements in check: the epigenetic perspective
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Effects of retroviruses on host genome function.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
The Pfam protein families database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
A unified classification system for eukaryotic transposable elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Discovering and detecting transposable elements in genome sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
The Gypsy Database (GyDB) of mobile genetic elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Automated recognition of retroviral sequences in genomic data--RetroTector
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
De novo identification of LTR retrotransposons in eukaryotic genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Transposable elements and the epigenetic regulation of the genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Genetics: Junk DNA as an evolutionary force
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Repbase Update, a database of eukaryotic repetitive elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
The Sequence Ontology: a tool for the unification of genome annotations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
The diversity of LTR retrotransposons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Long terminal repeat retrotransposons of Mus musculus
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Polypurine tract formation by Ty1 RNase H.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Reverse transcription of retroviruses and LTR retrotransposons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
EMBOSS: the European Molecular Biology Open Software Suite
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
A sequence immediately upstream of the plus-strand primer is essential for plus-strand DNA synthesis of the Saccharomyces cerevisiae Ty1 retrotransposon
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Profile hidden Markov models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Primer tRNAs for reverse transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
2 references
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1093%2FNAR%2FGKP759
retrieved
21 January 2018
tRNAs as primer of reverse transcriptases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Identification of common molecular subsequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Eukaryotic transposable elements and genome evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
Basic local alignment search tool
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
26 May 2018
TEclass--a tool for automated classification of unknown eukaryotic transposable elements.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
16 August 2018
Efficient algorithms and software for detection of full-length LTR retrotransposons.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
16 August 2018
LTR_STRUC: a novel search and identification program for LTR retrotransposons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790888
retrieved
16 August 2018
Identifiers
DOI
10.1093/NAR/GKP759
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
Fatcat ID
release_26zke6pvaveirdkjvdcc2zxv7m
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/26zke6pvaveirdkjvdcc2zxv7m
retrieved
24 November 2022
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mapped directly with Wikidata item
PMC publication ID
2790888
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
PubMed publication ID
19786494
1 reference
stated in
Europe PubMed Central
PMC publication ID
2790888
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19786494%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 February 2020
ResearchGate publication ID
26853438
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