(Q43150435)

14 November 2017

Atomic force microscopy of the EcoKI Type I DNA restriction enzyme bound to DNA shows enzyme dimerization and DNA looping (English)

1 reference

14 November 2017

Kelly J Neaves

1

1 reference

14 November 2017

Laurie P Cooper

2

1 reference

14 November 2017

John H White

3

1 reference

14 November 2017

Stewart M Carnally

4

1 reference

14 November 2017

David T F Dryden

5

1 reference

14 November 2017

J Michael Edwardson

6

1 reference

14 November 2017

Robert M Henderson

7

1 reference

14 November 2017

language of work or name

English

0 references

publication date

17 February 2009

1 reference

14 November 2017

Nucleic Acids Research

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14 November 2017

37

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14 November 2017

6

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14 November 2017

2053-2063

1 reference

DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes

14 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

IS911 transpososome assembly as analysed by tethered particle motion

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

DNA bending by M.EcoKI methyltransferase is coupled to nucleotide flipping.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

On the DNA cleavage mechanism of Type I restriction enzymes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Initiation of translocation by Type I restriction-modification enzymes is associated with a short DNA extrusion

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

How do site-specific DNA-binding proteins find their targets?

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Enzyme-mediated DNA looping

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Eukaryotic transcriptional regulatory complexes: cooperativity from near and afar

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Nucleoside triphosphate-dependent restriction enzymes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Translocation-independent dimerization of the EcoKI endonuclease visualized by atomic force microscopy

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle)

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Direct observation of one-dimensional diffusion and transcription by Escherichia coli RNA polymerase

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

DNA translocation blockage, a general mechanism of cleavage site selection by type I restriction enzymes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Sequence-specific DNA binding by EcoKI, a type IA DNA restriction enzyme

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Repercussions of DNA tracking by the type IC restriction endonuclease EcoR124I on linear, circular and catenated substrates.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Biology of DNA restriction

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Structure and Mechanism of Multifunctional Restriction Endonucleases

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Restriction of bacteriophage lambda by Escherichia coli K.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

The DNA restriction endonuclease of Escherichia coli B. I. Studies of the DNA translocation and the ATPase activities

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Model for how type I restriction enzymes select cleavage sites in DNA.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Electron microscopic studies of the mechanism of action of the restriction endonuclease of Escherichia coli B

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

ATP-induced conformational changes in the restriction endonuclease from Escherichia coli K-12

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Control of the endonuclease activity of type I restriction-modification systems is required to maintain chromosome integrity following homologous recombination.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Scanning force microscopy of DNA translocation by the Type III restriction enzyme EcoP15I.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

The DNA translocation and ATPase activities of restriction-deficient mutants of Eco KI.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

The type I restriction endonuclease R.EcoR124I: over-production and biochemical properties.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Dynamic interactions of p53 with DNA in solution by time-lapse atomic force microscopy

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

Adsorption of Biological Molecules to a Solid Support for Scanning Probe Microscopy

3 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2665228

DNA translocation by the restriction enzyme from E. coli K

1 December 2018

1 reference

12 December 2020

DNA cleavage by the type IC restriction-modification enzyme EcoR124II

1 reference

12 December 2020

The in vitro assembly of the EcoKI type I DNA restriction/modification enzyme and its in vivo implications

1 reference

12 December 2020

Communications between distant sites on supercoiled DNA from non-exponential kinetics for DNA synapsis by resolvase

1 reference

12 December 2020

Molecular weights of individual proteins correlate with molecular volumes measured by atomic force microscopy

1 reference

12 December 2020

Direct observation of DNA translocation and cleavage by the EcoKI endonuclease using atomic force microscopy

1 reference

12 December 2020

Formation of loops in DNA under tension

1 reference

12 December 2020

Multiple steps in DNA recognition by restriction endonuclease from E. coli K

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKP042

1 reference

14 November 2017

1 reference

14 November 2017

PubMed publication ID

19223329

1 reference