(Q43225901)

English

Procrustean rotation in concert with principal component analysis of molecular dynamics trajectories: Quantifying global and local differences between conformational samples

scientific article published in December 2009

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

16 November 2017

Procrustean rotation in concert with principal component analysis of molecular dynamics trajectories: Quantifying global and local differences between conformational samples (English)

1 reference

Europe PubMed Central

PubMed publication ID

16 November 2017

principal component analysis

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author name string

Daniel G Oblinsky

1

1 reference

Europe PubMed Central

PubMed publication ID

16 November 2017

Bryan M B Vanschouwen

2

1 reference

Europe PubMed Central

PubMed publication ID

16 November 2017

Heather L Gordon

3

1 reference

Europe PubMed Central

PubMed publication ID

16 November 2017

Stuart M Rothstein

4

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Europe PubMed Central

PubMed publication ID

16 November 2017

language of work or name

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publication date

1 December 2009

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Europe PubMed Central

PubMed publication ID

16 November 2017

Journal of Chemical Physics

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Europe PubMed Central

PubMed publication ID

16 November 2017

131

1 reference

Europe PubMed Central

PubMed publication ID

16 November 2017

22

1 reference

Europe PubMed Central

PubMed publication ID

16 November 2017

225102

1 reference

Europe PubMed Central

PubMed publication ID

16 November 2017

Essential dynamics of proteins

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

Functionally relevant protein motions: extracting basin-specific collective coordinates from molecular dynamics trajectories

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

Local-structural diversity and protein folding: application to all-beta off-lattice protein models

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

Collective motions in proteins: A covariance analysis of atomic fluctuations in molecular dynamics and normal mode simulations

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

Two crystal structures of the B1 immunoglobulin-binding domain of streptococcal protein G and comparison with NMR

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

A novel, highly stable fold of the immunoglobulin binding domain of streptococcal protein G

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

Analysis of side chain mobility among protein G B1 domain mutants with widely varying stabilities

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

Comparison between the backbone dynamics of an 11-amino acid peptide sequence in alpha-helical and beta-hairpin structural contexts.

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

Intrinsic beta-sheet propensities result from van der Waals interactions between side chains and the local backbone

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

NMR-detected conformational exchange observed in a computationally designed variant of protein Gbeta1.

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

A molecular dynamics simulation study of segment B1 of protein G.

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

Mechanics and dynamics of B1 domain of protein G: role of packing and surface hydrophobic residues

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

The bootstrap: a tutorial

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

A generalized solution of the orthogonal procrustes problem

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

The procrustes program: Producing direct rotation to test a hypothesized factor structure

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

Measurement of the β-sheet-forming propensities of amino acids

1 reference

https://api.crossref.org/works/10.1063%2F1.3268625

21 January 2018

Identifiers

10.1063/1.3268625

1 reference

Europe PubMed Central

PubMed publication ID

16 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

16 November 2017

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