(Q43437596)

23 November 2017

title

Statistical comparison of nucleotide, amino acid, and codon substitution models for evolutionary analysis of protein-coding sequences (English)

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23 November 2017

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Tae-Kun Seo

1

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23 November 2017

Hirohisa Kishino

series ordinal

2

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23 November 2017

publication date

1 April 2009

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23 November 2017

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23 November 2017

volume

58

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23 November 2017

issue

2

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23 November 2017

page(s)

199-210

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ProtTest: selection of best-fit models of protein evolution

23 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP015

Accounting for Uncertainty in the Tree Topology Has Little Effect on the Decision-Theoretic Approach to Model Selection in Phylogeny Estimation

21 January 2018

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A new look at the statistical model identification

21 January 2018

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Should we be worried about long-branch attraction in real data sets? Investigations using metazoan 18S rDNA.

21 January 2018

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Effects of Models of Rate Evolution on Estimation of Divergence Dates with Special Reference to the Metazoan 18S Ribosomal RNA Phylogeny

21 January 2018

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Topological bias and inconsistency of maximum likelihood using wrong models.

21 January 2018

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Model misspecification and probabilistic tests of topology: evidence from empirical data sets

21 January 2018

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Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: instability of a tree based on a single gene

21 January 2018

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Multiple sequence alignment with the Clustal series of programs

21 January 2018

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A combined empirical and mechanistic codon model.

21 January 2018

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Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

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Evolution of the mitochondrial cytochrome oxidase II gene in collembola

21 January 2018

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Success of maximum likelihood phylogeny inference in the four-taxon case

21 January 2018

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Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

21 January 2018

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Mitochondrial genome variation and the origin of modern humans

21 January 2018

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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

21 January 2018

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An empirical codon model for protein sequence evolution

21 January 2018

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Performance-based selection of likelihood models for phylogeny estimation

21 January 2018

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Mitochondrial phylogeny of hedgehogs and monophyly of Eulipotyphla

21 January 2018

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Rooting the eutherian tree: the power and pitfalls of phylogenomics

21 January 2018

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MODELTEST: testing the model of DNA substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP015

Selecting the best-fit model of nucleotide substitution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP015

Protein evolution with dependence among codons due to tertiary structure.

21 January 2018

1 reference

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Estimating the Dimension of a Model

21 January 2018

1 reference

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Synonymous substitutions substantially improve evolutionary inference from highly diverged proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP015

Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP015

Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences

21 January 2018

1 reference

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Bayesian selection of continuous-time Markov chain evolutionary models

21 January 2018

1 reference

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Phylogeography and molecular systematics of the Peromyscus aztecus species group (Rodentia: Muridae) inferred using parsimony and likelihood

21 January 2018

1 reference

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Estimating the rate of evolution of the rate of molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP015

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP015

Estimating the frequency of events that cause multiple-nucleotide changes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP015

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP015

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP015

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP015

Models of amino acid substitution and applications to mitochondrial protein evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYP015

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYP015

1 reference

23 November 2017

1 reference