(Q43564977)

24 November 2017

title

Whole genome duplication: challenges and considerations associated with sequence orthology assignment in Salmoninae (English)

1 reference

24 November 2017

main subject

whole genome duplication

1 reference

based on heuristic

inferred from title

whole genome sequencing

1 reference

H K Moghadam

1

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24 November 2017

M M Ferguson

series ordinal

2

1 reference

24 November 2017

R G Danzmann

series ordinal

3

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24 November 2017

publication date

1 September 2011

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24 November 2017

published in

Journal of Fish Biology

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24 November 2017

volume

79

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24 November 2017

issue

3

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24 November 2017

page(s)

561-574

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Tandem repeats finder: a program to analyze DNA sequences

24 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

A comparative analysis of the rainbow trout genome with 2 other species of fish (Arctic charr and Atlantic salmon) within the tetraploid derivative Salmonidae family (subfamily: Salmoninae).

21 January 2018

1 reference

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Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Gene tree discordance, phylogenetic inference and the multispecies coalescent

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

High-resolution species trees without concatenation

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Distinguishing Homologous from Analogous Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Ancient phylogenetic relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Reconstruction of ancient molecular phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

The evolution of functionally novel proteins after gene duplication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

The medaka draft genome and insights into vertebrate genome evolution

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Selection in the evolution of gene duplications

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

A salmonid EST genomic study: genes, duplications, phylogeny and microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Inconsistency of phylogenetic estimates from concatenated data under coalescence

21 January 2018

1 reference

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MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences

21 January 2018

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Clustal W and Clustal X version 2.0

21 January 2018

1 reference

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Evidence for Hox gene duplication in rainbow trout (Oncorhynchus mykiss): a tetraploid model species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Comparative genomics and evolution of conserved noncoding elements (CNE) in rainbow trout

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Chromosomal Speciation and Molecular Divergence--Accelerated Evolution in Rearranged Chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Chromosome evolution in the Salmonidae (Pisces): an update

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Assignment of rainbow trout linkage groups to specific chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

MODELTEST: testing the model of DNA substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Zebrafish comparative genomics and the origins of vertebrate chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

How should species phylogenies be inferred from sequence data?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Ancient noncoding elements conserved in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

The zebrafish gene map defines ancestral vertebrate chromosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Highly conserved non-coding sequences are associated with vertebrate development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Comparative genome analysis of the primary sex-determining locus in salmonid fishes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

DAMBE: software package for data analysis in molecular biology and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

On the best evolutionary rate for phylogenetic analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Very Low Power to Detect Asymmetric Divergence of Duplicated Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Large-Scale Appearance of Ultraconserved Elements in Tetrapod Genomes and Slowdown of the Molecular Clock

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

Molecular Systematics and Evolution of the Growth Hormone Introns in the Salmoninae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1095-8649.2011.03030.X

10.1111/J.1095-8649.2011.03030.X

21 January 2018

Identifiers

DOI

1 reference

24 November 2017

1 reference