(Q43578497)

24 November 2017

title

Automated computational framework for the analysis of electrostatic similarities of proteins (English)

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24 November 2017

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computational biology

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1

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24 November 2017

2

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24 November 2017

Jianfeng Yang

3

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24 November 2017

Dimitrios Gunopulos

series ordinal

4

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24 November 2017

publication date

14 January 2011

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24 November 2017

published in

Biotechnology Progress

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24 November 2017

volume

27

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24 November 2017

issue

2

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24 November 2017

page(s)

316-325

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Immunophysical exploration of C3d-CR2(CCP1-2) interaction using molecular dynamics and electrostatics

24 November 2017

cites work

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The electrostatic nature of C3d-complement receptor 2 association.

21 January 2018

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Immunophysical properties and prediction of activities for vaccinia virus complement control protein and smallpox inhibitor of complement enzymes using molecular dynamics and electrostatics

21 January 2018

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Electrostatic modeling predicts the activities of orthopoxvirus complement control proteins

21 January 2018

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Influence of electrostatics on the complement regulatory functions of Kaposica, the complement inhibitor of Kaposi's sarcoma-associated herpesvirus.

21 January 2018

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Computational studies of CXCR1, the receptor of IL-8/CXCL8, using molecular dynamics and electrostatics

21 January 2018

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pH dependence of stability of the 10th human fibronectin type III domain: a computational study

21 January 2018

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Electrostatic properties of the structure of the docking and dimerization domain of protein kinase A IIalpha

21 January 2018

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Native-state conformational dynamics of GART: a regulatory pH-dependent coil-helix transition examined by electrostatic calculations

21 January 2018

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Proton transfer dynamics of GART: the pH-dependent catalytic mechanism examined by electrostatic calculations

21 January 2018

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Selecting high quality protein structures from diverse conformational ensembles.

21 January 2018

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Cluster analysis and display of genome-wide expression patterns

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Hierarchical organization of modularity in metabolic networks

21 January 2018

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Cluster conservation as a novel tool for studying protein-protein interactions evolution

21 January 2018

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Automatic Subspace Clustering of High Dimensional Data

21 January 2018

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Structure of complement receptor 2 in complex with its C3d ligand

21 January 2018

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WHAT IF: a molecular modeling and drug design program

21 January 2018

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PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations

21 January 2018

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Electrostatics of nanosystems: application to microtubules and the ribosome

21 January 2018

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Electrostatic steering and ionic tethering in enzyme-ligand binding: insights from simulations

21 January 2018

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Classification of protein sequences by homology modeling and quantitative analysis of electrostatic similarity.

21 January 2018

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Application of new multi-resolution methods for the comparison of biomolecular electrostatic properties in the absence of global structural similarity

21 January 2018

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UCSF Chimera--a visualization system for exploratory research and analysis

21 January 2018

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Mutational analysis of the complement receptor type 2 (CR2/CD21)-C3d interaction reveals a putative charged SCR1 binding site for C3d.

21 January 2018

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Structure-guided identification of C3d residues essential for its binding to complement receptor 2 (CD21)

21 January 2018

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Mutational analyses reveal that the staphylococcal immune evasion molecule Sbi and complement receptor 2 (CR2) share overlapping contact residues on C3d: implications for the controversy regarding the CR2/C3d cocrystal structure.

21 January 2018

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Simulation of the diffusional association of barnase and barstar.

21 January 2018

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On the protein-protein diffusional encounter complex.

21 January 2018

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Diffusional encounter of barnase and barstar

21 January 2018

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Predicting the rate enhancement of protein complex formation from the electrostatic energy of interaction.

21 January 2018

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Electrostatically optimized Ras-binding Ral guanine dissociation stimulator mutants increase the rate of association by stabilizing the encounter complex

21 January 2018

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The kinetics of protein-protein recognition.

21 January 2018

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Visualization of transient encounter complexes in protein-protein association.

21 January 2018

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X-ray crystal structure of C3d: a C3 fragment and ligand for complement receptor 2

21 January 2018

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The 15 SCR flexible extracellular domains of human complement receptor type 2 can mediate multiple ligand and antigen interactions

21 January 2018

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Solution structure of the complex formed between human complement C3d and full-length complement receptor type 2.

21 January 2018

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Mapping of the C3d ligand binding site on complement receptor 2 (CR2/CD21) using nuclear magnetic resonance and chemical shift analysis

21 January 2018

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21 January 2018

Identifiers

DOI

10.1002/BTPR.541

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24 November 2017

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