(Q43666437)

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Different roles for basic and aromatic amino acids in conserved region 2 of Escherichia coli sigma(70) in the nucleation and maintenance of the single-stranded DNA bubble in open RNA polymerase-promoter complexes

scientific article published on 6 July 2001

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scholarly article

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Europe PubMed Central

25 November 2017

Different roles for basic and aromatic amino acids in conserved region 2 of Escherichia coli sigma(70) in the nucleation and maintenance of the single-stranded DNA bubble in open RNA polymerase-promoter complexes (English)

1 reference

Europe PubMed Central

25 November 2017

Escherichia coli

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based on heuristic

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author name string

Tomsic M

1

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Europe PubMed Central

25 November 2017

Tsujikawa L

2

1 reference

Europe PubMed Central

25 November 2017

Panaghie G

3

1 reference

Europe PubMed Central

25 November 2017

Wang Y

4

1 reference

Europe PubMed Central

25 November 2017

Azok J

5

1 reference

Europe PubMed Central

25 November 2017

deHaseth PL

6

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Europe PubMed Central

25 November 2017

language of work or name

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publication date

6 July 2001

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25 November 2017

Journal of Biological Chemistry

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25 November 2017

276

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25 November 2017

31891-31896

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Europe PubMed Central

25 November 2017

34

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Europe PubMed Central

25 November 2017

Kinetics of open complex formation between Escherichia coli RNA polymerase and the lac UV5 promoter. Evidence for a sequential mechanism involving three steps

1 reference

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Kinetics and mechanism of the interaction of Escherichia coli RNA polymerase with the λPR promoter

1 reference

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E. coli RNA polymerase interacts homologously with two different promoters

1 reference

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Protein-nucleic acid interactions during open complex formation investigated by systematic alteration of the protein and DNA binding partners

1 reference

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Mapping of single-stranded regions in duplex DNA at the sequence level: single-strand-specific cytosine methylation in RNA polymerase-promoter complexes

1 reference

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Influence of Mg2+ and temperature on formation of the transcription bubble

1 reference

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Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase

1 reference

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21 January 2018

The sigma 70 family: sequence conservation and evolutionary relationships

1 reference

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21 January 2018

Aromatic amino acids in region 2.3 of Escherichia coli sigma 70 participate collectively in the formation of an RNA polymerase-promoter open complex

1 reference

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21 January 2018

Conformation and DNA binding properties of a single-stranded DNA binding region of sigma 70 subunit from Escherichia coli RNA polymerase are modulated by an interaction with the core enzyme

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M105027200

21 January 2018

Promoter recognition as measured by binding of polymerase to nontemplate strand oligonucleotide

1 reference

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Escherichia coli promoter opening and -10 recognition: mutational analysis of sigma70.

1 reference

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Promoter opening via a DNA fork junction binding activity

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Crystal structure of a sigma 70 subunit fragment from E. coli RNA polymerase

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21 January 2018

A simple procedure for resolution of Escherichia coli RNA polymerase holoenzyme from core polymerase

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Inhibition of Escherichia coli RNA polymerase by bacteriophage T4 AsiA.

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Kinetic analysis of RNA polymerase-promoter interactions

1 reference

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A promoter melting region in the primary sigma factor of Bacillus subtilis. Identification of functionally important aromatic amino acids

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Mutations in sigma factor that affect the temperature dependence of transcription from a promoter, but not from a mismatch bubble in double-stranded DNA.

1 reference

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21 January 2018

Equilibrium and kinetic parameters of the sequence-specific interaction of Escherichia coli RNA polymerase with nontemplate strand oligodeoxyribonucleotides

1 reference

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21 January 2018

Nonspecific interactions of Escherichia coli RNA polymerase with native and denatured DNA: differences in the binding behavior of core and holoenzyme

1 reference

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21 January 2018

sigma factor mutations affecting the sequence-selective interaction of RNA polymerase with -10 region single-stranded DNA

1 reference

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21 January 2018

Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision

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DNA bending and a flip-out mechanism for base excision by the helix–hairpin–helix DNA glycosylase, Escherichia coli AlkA

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21 January 2018

Three-dimensional structure of the Tn5 synaptic complex transposition intermediate

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Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal

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A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA

1 reference

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21 January 2018

Stimulation of open complex formation by nicks and apurinic sites suggests a role for nucleation of DNA melting in Escherichia coli promoter function

1 reference

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21 January 2018

Functional roles of the conserved aromatic amino acid residues at position 108 (motif IV) and position 196 (motif VIII) in base flipping and catalysis by the N6-adenine DNA methyltransferase from Thermus aquaticus

1 reference

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21 January 2018

Identifiers

10.1074/JBC.M105027200

1 reference

Europe PubMed Central

25 November 2017

1 reference

Europe PubMed Central

25 November 2017

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