(Q43726529)

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Comparison of isocitrate dehydrogenase from three hyperthermophiles reveals differences in thermostability, cofactor specificity, oligomeric state, and phylogenetic affiliation

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scholarly article

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Europe PubMed Central

PubMed publication ID

26 November 2017

Comparison of isocitrate dehydrogenase from three hyperthermophiles reveals differences in thermostability, cofactor specificity, oligomeric state, and phylogenetic affiliation (English)

1 reference

Europe PubMed Central

PubMed publication ID

26 November 2017

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author name string

Steen IH

1

1 reference

Europe PubMed Central

PubMed publication ID

26 November 2017

Madern D

2

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Europe PubMed Central

PubMed publication ID

26 November 2017

Karlström M

3

1 reference

Europe PubMed Central

PubMed publication ID

26 November 2017

Lien T

4

1 reference

Europe PubMed Central

PubMed publication ID

26 November 2017

Ladenstein R

5

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Europe PubMed Central

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26 November 2017

Birkeland NK

6

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Europe PubMed Central

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26 November 2017

language of work or name

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publication date

31 August 2001

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Europe PubMed Central

PubMed publication ID

26 November 2017

number of pages

8

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Journal of Biological Chemistry

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Europe PubMed Central

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26 November 2017

276

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Europe PubMed Central

PubMed publication ID

26 November 2017

47

1 reference

Europe PubMed Central

PubMed publication ID

26 November 2017

43924-43931

1 reference

Europe PubMed Central

PubMed publication ID

26 November 2017

Structure of a bacterial enzyme regulated by phosphorylation, isocitrate dehydrogenase

1 reference

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Regulation of an enzyme by phosphorylation at the active site

1 reference

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21 January 2018

Catalytic mechanism of NADP(+)-dependent isocitrate dehydrogenase: implications from the structures of magnesium-isocitrate and NADP+ complexes

1 reference

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21 January 2018

The isocitrate dehydrogenase phosphorylation cycle: regulation and enzymology

1 reference

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Structure of isocitrate dehydrogenase with alpha-ketoglutarate at 2.7-A resolution: conformational changes induced by decarboxylation of isocitrate

1 reference

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21 January 2018

Structure of isocitrate dehydrogenase with isocitrate, nicotinamide adenine dinucleotide phosphate, and calcium at 2.5-A resolution: a pseudo-Michaelis ternary complex

1 reference

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21 January 2018

Mutagenesis and Laue structures of enzyme intermediates: isocitrate dehydrogenase

1 reference

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21 January 2018

Access to phosphorylation in isocitrate dehydrogenase may occur by domain shifting

1 reference

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Crystal structure of Bacillus subtilis isocitrate dehydrogenase at 1.55 A. Insights into the nature of substrate specificity exhibited by Escherichia coli isocitrate dehydrogenase kinase/phosphatase

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21 January 2018

Chemical and biological evolution of nucleotide-binding protein

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Three-dimensional structure of a highly thermostable enzyme, 3-isopropylmalate dehydrogenase of Thermus thermophilus at 2.2 A resolution

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21 January 2018

Modeling substrate binding in Thermus thermophilus isopropylmalate dehydrogenase

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A highly active decarboxylating dehydrogenase with rationally inverted coenzyme specificity

1 reference

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Redesigning secondary structure to invert coenzyme specificity in isopropylmalate dehydrogenase

1 reference

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Determinants of cofactor specificity in isocitrate dehydrogenase: structure of an engineered NADP+ --> NAD+ specificity-reversal mutant

1 reference

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21 January 2018

Redesigning the substrate specificity of an enzyme: isocitrate dehydrogenase

1 reference

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Structural basis for a change in substrate specificity: crystal structure of S113E isocitrate dehydrogenase in a complex with isopropylmalate, Mg2+, and NADP

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Tartrate dehydrogenase, a new member of the family of metal-dependent decarboxylating R-hydroxyacid dehydrogenases

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Functional prediction: identification of protein orthologs and paralogs

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Identification of enzymes homologous to isocitrate dehydrogenase that are involved in coenzyme B and leucine biosynthesis in methanoarchaea

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21 January 2018

Biochemical and phylogenetic characterization of isocitrate dehydrogenase from a hyperthermophilic archaeon, Archaeoglobus fulgidus

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Purification and characterization of isocitrate dehydrogenase from a hyperthermophilic archaebacterium, Caldococcus noboribetus.

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Purification and properties of NADP-isocitrate dehydrogenase from the unicellular cyanobacterium Synechocystis sp. PCC 6803

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NADP(+)-isocitrate dehydrogenase from the cyanobacterium Anabaena sp. strain PCC 7120: purification and characterization of the enzyme and cloning, sequencing, and disruption of the icd gene

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Cloning, sequence analysis, expression, and inactivation of the Corynebacterium glutamicum icd gene encoding isocitrate dehydrogenase and biochemical characterization of the enzyme

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21 January 2018

Purification and characterization of monomeric isocitrate dehydrogenase with NADP(+)-specificity from Vibrio parahaemolyticus Y-4

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Purification and characterization of a monomeric isocitrate dehydrogenase with dual coenzyme specificity from the photosynthetic bacterium Rhodomicrobium vannielii

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21 January 2018

Genes encoding two isocitrate dehydrogenase isozymes of a psychrophilic bacterium, Vibrio sp. strain ABE-1.

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21 January 2018

Protein engineering reveals ancient adaptive replacements in isocitrate dehydrogenase

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21 January 2018

Eubacteria-type isocitrate dehydrogenase from an archaeon: cloning, sequencing, and expression of a gene encoding isocitrate dehydrogenase from a hyperthermophilic archaebacterium, Caldococcus noboribetus

1 reference

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21 January 2018

Isocitrate dehydrogenase, malate dehydrogenase, and glutamate dehydrogenase from Archaeoglobus fulgidus

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21 January 2018

A method for directly fitting the time derivative of sedimentation velocity data and an alternative algorithm for calculating sedimentation coefficient distribution functions.

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Boundary analysis in sedimentation transport experiments: a procedure for obtaining sedimentation coefficient distributions using the time derivative of the concentration profile

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The direct linear plot. A new graphical procedure for estimating enzyme kinetic parameters

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A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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Yeast diphosphopyridine nucleotide specific isocitrate dehydrogenase. Purification and some properties.

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Kinetic analysis of NAD(+)-isocitrate dehydrogenase with altered isocitrate binding sites: contribution of IDH1 and IDH2 subunits to regulation and catalysis

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Isolation and sequence of a cDNA encoding porcine mitochondrial NADP-specific isocitrate dehydrogenase

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Subunit structure, expression, and function of NAD(H)-specific isocitrate dehydrogenase in Saccharomyces cerevisiae

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Molecular characterization of higher plant NAD-dependent isocitrate dehydrogenase: evidence for a heteromeric structure by the complementation of yeast mutants

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A highly specific monomeric isocitrate dehydrogenase from Corynebacterium glutamicum

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Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima

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The crystal structure of citrate synthase from the hyperthermophilic archaeon pyrococcus furiosus at 1.9 A resolution,

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Factors enhancing protein thermostability

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Aeropyrum pernix gen. nov., sp. nov., a novel aerobic hyperthermophilic archaeon growing at temperatures up to 100 degrees C

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Isolation of extremely thermophilic sulfate reducers: evidence for a novel branch of archaebacteria

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Pyrococcus furiosus sp. nov. represents a novel genus of marine heterotrophic archaebacteria growing optimally at 100�C

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Thermotoga maritima sp. nov. represents a new genus of unique extremely thermophilic eubacteria growing up to 90°C

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Transient hydrogen bonds identified on the surface of the NMR solution structure of Hirudin

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Kinetic analysis on the substrate specificity of 3-isopropylmalate dehydrogenase

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Oxidized triphosphopyridine nucleotide specific isocitrate dehydrogenase from Azotobacter vinelandii. Isolation and characterization

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Purification and characterization of a monomeric isocitrate dehydrogenase from the sulfate-reducing bacterium Desulfobacter vibrioformis and demonstration of the presence of a monomeric enzyme in other bacteria

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Isozymes of isocitrate dehydrogenase from an obligately psychrophilic bacterium, Vibrio sp. strain ABE-1: purification, and modulation of activities by growth conditions

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Identification by mutagenesis of arginines in the substrate binding site of the porcine NADP-dependent isocitrate dehydrogenase

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Evaluation by site-directed mutagenesis of aspartic acid residues in the metal site of pig heart NADP-dependent isocitrate dehydrogenase

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Identifiers

10.1074/JBC.M105999200

1 reference

Europe PubMed Central

PubMed publication ID

26 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 November 2017

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