(Q44049725)

English

Elucidating a key intermediate in homologous DNA strand exchange: structural characterization of the RecA-triple-stranded DNA complex using fluorescence resonance energy transfer

scientific article published in July 2002

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scholarly article

1 reference

Europe PubMed Central

29 November 2017

Elucidating a key intermediate in homologous DNA strand exchange: structural characterization of the RecA-triple-stranded DNA complex using fluorescence resonance energy transfer (English)

1 reference

Europe PubMed Central

29 November 2017

author name string

Jie Xiao

1

1 reference

Europe PubMed Central

29 November 2017

Scott F Singleton

2

1 reference

Europe PubMed Central

29 November 2017

language of work or name

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publication date

1 July 2002

1 reference

Europe PubMed Central

29 November 2017

Journal of Molecular Biology

1 reference

Europe PubMed Central

29 November 2017

320

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Europe PubMed Central

29 November 2017

3

1 reference

Europe PubMed Central

29 November 2017

529-558

1 reference

Europe PubMed Central

29 November 2017

Homologous pairing and strand exchange in genetic recombination

1 reference

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7 January 2021

Biochemistry of Genetic Recombination: Energetics and Mechanism of DNA Strand Exchange

1 reference

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7 January 2021

Characterization of a mutant strain of Saccharomyces cerevisiae with a deletion of the RAD27 gene, a structural homolog of the RAD2 nucleotide excision repair gene

1 reference

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7 January 2021

Participation of recombination proteins in rescue of arrested replication forks in UV-irradiated Escherichia coli need not involve recombination

1 reference

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7 January 2021

The importance of repairing stalled replication forks

1 reference

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7 January 2021

DNA strand exchange proteins: a biochemical and physical comparison.

1 reference

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7 January 2021

Visualization of RecA-DNA complexes involved in consecutive stages of an in vitro strand exchange reaction

1 reference

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7 January 2021

RecA-DNA helical complexes in genetic recombination.

1 reference

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7 January 2021

Structure of helical RecA-DNA complexes. Complexes formed in the presence of ATP-gamma-S or ATP.

1 reference

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7 January 2021

The location of DNA in RecA-DNA helical filaments.

1 reference

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7 January 2021

Elongation of duplex DNA by recA protein

1 reference

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7 January 2021

Characterization of complexes between recA protein and duplex DNA by electron microscopy

1 reference

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7 January 2021

The helicity of DNA in complexes with recA protein

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Studies of the interaction of RecA protein with DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Extent of duplex DNA underwinding induced by RecA protein binding in the presence of ATP

1 reference

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7 January 2021

A molecular model for RecA-promoted strand exchange via parallel triple-stranded helices

1 reference

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7 January 2021

DNA stretching and compression: large-scale simulations of double helical structures

1 reference

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7 January 2021

Does a stretched DNA structure dictate the helical geometry of RecA-like filaments?

1 reference

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7 January 2021

Homologous genetic recombination as an intrinsic dynamic property of a DNA structure induced by RecA/Rad51-family proteins: a possible advantage of DNA over RNA as genomic material

1 reference

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7 January 2021

Domain structure and dynamics in the helical filaments formed by RecA and Rad51 on DNA.

1 reference

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7 January 2021

Radioprobing of a RecA-three-stranded DNA complex with iodine 125: evidence for recognition of homology in the major groove of the target duplex

1 reference

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7 January 2021

Fluorescence Energy Transfer as a Spectroscopic Ruler

1 reference

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7 January 2021

Fluorescence resonance energy transfer and nucleic acids

1 reference

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7 January 2021

Resonance energy transfer: methods and applications

1 reference

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7 January 2021

Fluorescence resonance energy transfer as a probe of DNA structure and function

1 reference

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7 January 2021

Recent advances in FRET: distance determination in protein-DNA complexes

1 reference

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7 January 2021

Kinetic analysis of pairing and strand exchange catalyzed by RecA. Detection by fluorescence energy transfer.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Three mechanistic steps detected by FRET after presynaptic filament formation in homologous recombination. ATP hydrolysis required for release of oligonucleotide heteroduplex product from RecA.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Polarity of DNA strand exchange promoted by recombination proteins of the RecA family

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

A standard reference frame for the description of nucleic acid base-pair geometry.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Observing the helical geometry of double-stranded DNA in solution by fluorescence resonance energy transfer

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Equilibrium binding of single-stranded DNA to the secondary DNA binding site of the bacterial recombinase RecA.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Distribution of phospholipids around gramicidin and D-beta-hydroxybutyrate dehydrogenase as measured by resonance energy transfer

1 reference

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7 January 2021

Fluorescence energy transfer analysis of calmodulin-peptide complexes

1 reference

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7 January 2021

Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction

1 reference

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7 January 2021

Fluorescence resonance energy transfer within a heterochromatic cAMP-dependent protein kinase holoenzyme under equilibrium conditions: new insights into the conformational changes that result in cAMP-dependent activation

1 reference

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7 January 2021

Sensitive fluorescence-based thermodynamic and kinetic measurements of DNA hybridization in solution

1 reference

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7 January 2021

The solution structure of the four-way DNA junction at low-salt conditions: a fluorescence resonance energy transfer analysis

1 reference

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7 January 2021

Structural studies on folding intermediates of serine hydroxymethyltransferase using fluorescence resonance energy transfer

1 reference

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7 January 2021

Global structure of three-way DNA junctions with and without additional unpaired bases: a fluorescence resonance energy transfer analysis

1 reference

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7 January 2021

The helix-coil transition of DNA duplexes and hairpins observed by multiple fluorescence parameters

1 reference

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7 January 2021

Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

1 reference

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7 January 2021

Fluorescence characteristics of 5-carboxytetramethylrhodamine linked covalently to the 5' end of oligonucleotides: multiple conformers of single-stranded and double-stranded dye-DNA complexes

1 reference

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7 January 2021

Global structure similarities of intact and nicked DNA complexed with IHF measured in solution by fluorescence resonance energy transfer

1 reference

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7 January 2021

Location of cyanine-3 on double-stranded DNA: importance for fluorescence resonance energy transfer studies

1 reference

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7 January 2021

A Theory of Sensitized Luminescence in Solids

1 reference

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7 January 2021

Direct visualization of dynamics and co-operative conformational changes within RecA filaments that appear to be associated with the hydrolysis of adenosine 5'-O-(3-thiotriphosphate).

1 reference

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7 January 2021

The orientational freedom of molecular probes. The orientation factor in intramolecular energy transfer

1 reference

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7 January 2021

The synapsis event in the homologous pairing of DNAs: RecA recognizes and pairs less than one helical repeat of DNA

1 reference

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7 January 2021

Efficient interaction of recA protein with fluorescent dye-labeled oligonucleotides

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Structure and function of RecA-DNA complexes.

1 reference

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7 January 2021

Stable DNA heteroduplex formation catalyzed by the Escherichia coli RecA protein in the absence of ATP hydrolysis

1 reference

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7 January 2021

The structure of the E. coli recA protein monomer and polymer

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Structural data suggest that the active and inactive forms of the RecA filament are not simply interconvertible

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Electron microscopic visualization of recA-DNA filaments: evidence for a cyclic extension of duplex DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Single strands induce recA protein to unwind duplex DNA for homologous pairing

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Determination of the number of superhelical turns in simian virus 40 DNA by gel electrophoresis

1 reference

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7 January 2021

The number of superhelical turns in native Virion SV40 DNA and Minicol DNA determined by the band counting method

1 reference

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7 January 2021

Electron microscopy can be used to measure DNA supertwisting

1 reference

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7 January 2021

Effects of minor and major groove-binding drugs and intercalators on the DNA association of minor groove-binding proteins RecA and deoxyribonuclease I detected by flow linear dichroism.

1 reference

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7 January 2021

Local DNA stretching mimics the distortion caused by the TATA box-binding protein

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Minor groove-binding architectural proteins: structure, function, and DNA recognition.

1 reference

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7 January 2021

The specificity of the secondary DNA binding site of RecA protein defines its role in DNA strand exchange

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

In vitro selection of preferred DNA pairing sequences by the Escherichia coli RecA protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Second-Site RecA−DNA Interactions: Lack of Identical Recognition

1 reference

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7 January 2021

Thermochemical and kinetic evidence for nucleotide-sequence-dependent RecA-DNA interactions.

1 reference

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7 January 2021

Effects of DNA sequence and structure on binding of RecA to single-stranded DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Influence of DNA sequence on the positioning of RecA monomers in RecA-DNA cofilaments

1 reference

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7 January 2021

RecA as a motor protein. Testing models for the role of ATP hydrolysis in DNA strand exchange

1 reference

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7 January 2021

Role of RecA protein spiral filaments in genetic recombination

1 reference

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7 January 2021

RecA-like recombination proteins in eukaryotes: functions and structures of RAD51 genes

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

A parallel DNA triplex as a model for the intermediate in homologous recombination.

1 reference

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7 January 2021

Homologous recombination proteins in prokaryotes and eukaryotes

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

An extended DNA structure through deoxyribose-base stacking induced by RecA protein

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Homology-dependent underwinding of duplex DNA in recA protein generated paranemic complexes.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Unwinding of heterologous DNA by RecA protein during the search for homologous sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Helical repeat of DNA in the region of homologous pairing

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

The duplex DNA is very underwound in the three-stranded RecA protein-mediated synaptic complex

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Why does RecA protein hydrolyse ATP?

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Evidence for the coupling of ATP hydrolysis to the final (extension) phase of RecA protein-mediated DNA strand exchange.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Stable synapsis of homologous DNA molecules mediated by the Escherichia coli RecA protein involves local exchange of DNA strands

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

RecA.oligonucleotide filaments bind in the minor groove of double-stranded DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Sequence-specific covalent modification of DNA by cross-linking oligonucleotides. Catalysis by RecA and implication for the mechanism of synaptic joint formation

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

DNA strand exchange mediated by the Escherichia coli RecA protein initiates in the minor groove of double-stranded DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Periodicity in recA protein-DNA complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

The function of the secondary DNA-binding site of RecA protein during DNA strand exchange

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Interactions of three strands in joints made by RecA protein.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Range of radiochemical damage to DNA with decay of iodine-125.

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Design and evaluation of a tryptophanless RecA protein with wild type activity

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Characterization of fluorescein-oligonucleotide conjugates and measurement of local electrostatic potential

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Properties of the high-affinity single-stranded DNA binding state of the Escherichia coli recA protein

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

RecA protein filaments: end-dependent dissociation from ssDNA and stabilization by RecO and RecR proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900462-X

7 January 2021

Identifiers

10.1016/S0022-2836(02)00462-X

1 reference

Europe PubMed Central

29 November 2017

1 reference

Europe PubMed Central

29 November 2017

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