(Q44181591)

30 November 2017

title

DAPI binding to the DNA minor groove: a continuum solvent analysis (English)

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30 November 2017

L F Pineda De Castro

1

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30 November 2017

M Zacharias

series ordinal

2

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30 November 2017

publication date

1 July 2002

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Journal of Molecular Recognition

30 November 2017

published in

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30 November 2017

volume

15

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30 November 2017

issue

4

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30 November 2017

page(s)

209-220

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Base-sequence specificity of Hoechst 33258 and DAPI binding to five (A/T)4 DNA sites with kinetic evidence for more than one high-affinity Hoechst 33258-AATT complex

30 November 2017

cites work

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Modelling ion binding to AA platform motifs in RNA: a continuum solvent study including conformational adaptation

21 January 2018

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Different bindings of the minor groove ligands DAPI and Hoechst 33258 to multimers of the curved (CA4T4G) and noncurved (CT4A4G) DNA sequences.

21 January 2018

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A surface plasmon resonance method for detecting multiple modes of DNA-ligand interactions

21 January 2018

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A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

21 January 2018

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Pairwise solute descreening of solute charges from a dielectric medium

21 January 2018

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Parametrized Models of Aqueous Free Energies of Solvation Based on Pairwise Descreening of Solute Atomic Charges from a Dielectric Medium

21 January 2018

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Photofootprinting of drug-binding sites on DNA using diazo- and azido-9-aminoacridine derivatives

21 January 2018

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Protein-DNA interactions: A structural analysis

21 January 2018

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The structure of DAPI bound to DNA

21 January 2018

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Optical studies of metaphase chromosome organization

21 January 2018

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The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

21 January 2018

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Defining the structure of irregular nucleic acids: conventions and principles

21 January 2018

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Binding of Hoechst 33258 and 4',6-diamidino-2-phenylindole to self-complementary decadeoxynucleotides with modified exocyclic base substituents

21 January 2018

1 reference

Interpreting trends in the binding of cyclic ureas to HIV-1 protease.

21 January 2018

1 reference

A thermodynamic and structural analysis of DNA minor-groove complex formation

21 January 2018

1 reference

Salt effects on ligand-DNA binding. Minor groove binding antibiotics.

21 January 2018

1 reference

A study of the interaction of DAPI with DNA containing AT and non-AT sequences--molecular specificity of minor groove binding drugs

21 January 2018

1 reference

The effect of nucleic acid geometry on counterion association.

21 January 2018

1 reference

Grand canonical Monte Carlo molecular and thermodynamic predictions of ion effects on binding of an oligocation (L8+) to the center of DNA oligomers

21 January 2018

1 reference

Assignment of DNA binding sites for 4',6-diamidine-2-phenylindole and bisbenzimide (Hoechst 33258). A comparative footprinting study

21 January 2018

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Environment and exposure to solvent of protein atoms. Lysozyme and insulin

21 January 2018

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Semianalytical treatment of solvation for molecular mechanics and dynamics

21 January 2018

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Simultaneous and different binding mechanisms of 4',6-diamidino-2-phenylindole to DNA hexamer (d(CGATCG))2. A 1H NMR study

21 January 2018

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Crystal structure of d(GGCCAATTGG) complexed with DAPI reveals novel binding mode

21 January 2018

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Re-refinement of the B-dodecamer d(CGCGAATTCGCG) with a comparative analysis of the solvent in it and in the Z-hexamer d(5BrCG5BrCG5BrCG)

21 January 2018

1 reference

Unrestrained stochastic dynamics simulations of the UUCG tetraloop using an implicit solvation model

21 January 2018

1 reference

DNA sequence dependent binding modes of 4',6-diamidino-2-phenylindole (DAPI).

21 January 2018

1 reference

Conformational analysis of DNA-trinucleotide-hairpin-loop structures using a continuum solvent model

21 January 2018

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Large electrostatic differences in the binding thermodynamics of a cationic peptide to oligomeric and polymeric DNA.

21 January 2018

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Nonintercalating DNA-binding ligands: specificity of the interaction and their use as tools in biophysical, biochemical and biological investigations of the genetic material

21 January 2018

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Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian Dynamics program

21 January 2018

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21 January 2018

Identifiers

DOI

10.1002/JMR.581

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30 November 2017

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