(Q44225434)

1 December 2017

title

PvuII-endonuclease induces structural alterations at the scissile phosphate group of its cognate DNA. (English)

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1 December 2017

8

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1 December 2017

Christine Rauch

1

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1 December 2017

Michael Trieb

2

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1 December 2017

Wolfgang Flader

3

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1 December 2017

Bernd Wellenzohn

4

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1 December 2017

Rudolf H Winger

5

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1 December 2017

Erwin Mayer

6

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1 December 2017

Andreas Hallbrucker

7

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1 December 2017

language of work or name

English

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publication date

1 November 2002

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Journal of Molecular Biology

1 December 2017

published in

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1 December 2017

volume

324

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1 December 2017

issue

3

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1 December 2017

page(s)

491-500

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Structure and function of type II restriction endonucleases

1 December 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Type II restriction endonucleases: structural, functional and evolutionary relationships

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Structure and function of restriction endonucleases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

The energetics of the interaction of BamHI endonuclease with its recognition site GGATCC.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Direct versus indirect readout in the interaction of the trp repressor with non-canonical binding sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Probing the indirect readout of the restriction enzyme EcoRV. Mutational analysis of contacts to the DNA backbone

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

The name is bond--H bond.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

The PD...(D/E)XK motif in restriction enzymes: a link between function and conformation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Intra- vs intersubunit communication in the homodimeric restriction enzyme EcoRV: Thr 37 and Lys 38 involved in indirect readout are only important for the catalytic activity of their own subunit

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Conformational flexibility of DNA: polymorphism and handedness

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Helix geometry, hydration, and G.A mismatch in a B-DNA decamer

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Complex of B-DNA with polyamides freezes DNA backbone flexibility.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Molecular dynamics studies of axis bending in d(G5-(GA4T4C)2-C5) and d(G5-(GT4A4C)2-C5): effects of sequence polarity on DNA curvature

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Two new restriction endonucleases from Proteus vulgaris

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Purification, crystallization and preliminary X-ray diffraction studies of the PvuII endonuclease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Catalytic and DNA binding properties of PvuII restriction endonuclease mutants

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

How is modification of the DNA substrate recognized by the PvuII restriction endonuclease?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Asp34 of PvuII endonuclease is directly involved in DNA minor groove recognition and indirectly involved in catalysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Dissecting the metal ion dependence of DNA binding by PvuII endonuclease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Effects of divalent metal ions on the activity and conformation of native and 3-fluorotyrosine-PvuII endonucleases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

A catalytically deficient active site variant of PvuII endonuclease binds Mg(II) ions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Making the most of metal ions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

DNA cleavage by the EcoRV restriction endonuclease: roles of divalent metal ions in specificity and catalysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Altering the specificity of restriction endonuclease: effect of replacing Mg2+with Mn2+

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Divalent metal ions at the active sites of the EcoRV and EcoRI restriction endonucleases.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

PvuII endonuclease contains two calcium ions in active sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Specific DNA recognition by EcoRV restriction endonuclease induced by calcium ions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Divalent metal dependence of site-specific DNA binding by EcoRV endonuclease.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Substrate-assisted catalysis in the cleavage of DNA by the EcoRI and EcoRV restriction enzymes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

On the catalytic mechanism of EcoRI and EcoRV. A detailed proposal based on biochemical results, structural data and molecular modelling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Evidence for substrate-assisted catalysis in the DNA cleavage of several restriction endonucleases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Substrate-assisted catalysis: molecular basis and biological significance

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Engineering enzyme specificity by "substrate-assisted catalysis"

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Probing the mechanism and improving the rate of substrate-assisted catalysis in subtilisin BPN'

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Metal ion-mediated substrate-assisted catalysis in type II restriction endonucleases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Molecular dynamics simulation of a 13-mer duplex DNA: a PvuII substrate

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Probing the general base catalysis in the first step of BamHI action by computer simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Identification of the metal-binding sites of restriction endonucleases by Fe2+-mediated oxidative cleavage

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Modeling DNA structures: molecular mechanics and molecular dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Calculations of nucleic acid conformations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

NMR and molecular dynamics studies of the hydration of a zinc finger-DNA complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Indirect readout of the trp-repressor-operator complex by B-DNA's backbone conformation transitions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Observation of the A-DNA to B-DNA transition during unrestrained molecular dynamics in aqueous solution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Effect of periodic box size on aqueous molecular dynamics simulation of a DNA dodecamer with particle-mesh Ewald method

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

Helix morphology changes in B-DNA induced by spontaneous B(I)<==>B(II) substrate interconversion

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

VMD: visual molecular dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901089-6

10.1016/S0022-2836(02)01089-6

7 January 2021

Identifiers

DOI

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1 December 2017

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