(Q44290687)

1 December 2017

Sequence and structure patterns in proteins from an analysis of the shortest helices: implications for helix nucleation (English)

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1 December 2017

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Lipika Pal

1

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1 December 2017

Pinak Chakrabarti

series ordinal

2

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1 December 2017

Gautam Basu

series ordinal

3

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1 December 2017

language of work or name

English

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publication date

1 February 2003

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Journal of Molecular Biology

1 December 2017

19

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based on heuristic

inferred from page(s)

published in

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1 December 2017

326

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1 December 2017

1

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1 December 2017

273-291

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Stereochemical criteria for polypeptides and proteins. V. Conformation of a system of three linked peptide units

1 December 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Chain reversals in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Turns in peptides and proteins

7 January 2021

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

A revised set of potentials for beta-turn formation in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

The anatomy and taxonomy of protein structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Algorithms for prediction of alpha-helical and beta-structural regions in globular proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Recognizing native folds by the arrangement of hydrophobic and polar residues

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

A simple protein folding algorithm using a binary code and secondary structure constraints.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Binary patterning of polar and nonpolar amino acids in the sequences and structures of native proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Amino acid preferences for specific locations at the ends of alpha helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Helix signals in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Position dependence of non-polar amino acid intrinsic helical propensities

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Side-chain structures in the first turn of the α-helix 1 1Edited by J. M. Thornton

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Periodicity in alpha-helix lengths and C-capping preferences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Differences in the amino acid distributions of 3(10)-helices and alpha-helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

The interrelationships of side-chain and main-chain conformations in proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Variants of 3(10)-helices in proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Novel protein structural motifs containing two-turn and longer 3(10)-helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Structures of N-termini of helices in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Helix stop signals in proteins and peptides: the capping box

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Sequence determinants of the capping box, a stabilizing motif at the N-termini of alpha-helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

C-capping and helix stability: the Pro C-capping motif

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Conformation of β-hairpins in protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Hydrogen bonding in globular proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Solvent-induced distortions and the curvature of alpha-helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Helix geometry in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

The influence of proline residues on alpha-helical structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Structural and sequence characteristics of long alpha helices in globular proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

C--H...O hydrogen bond involving proline residues in alpha-helices

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Is protein folding hierarchic? I. Local structure and peptide folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Unfolding of an ?-helix in water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Molecular dynamics simulations of the unfolding of an alpha-helical analogue of ribonuclease A S-peptide in water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Molecular dynamics simulations of helix denaturation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Conformational preferences of oligopeptides rich in alpha-aminoisobutyric acid. II. A model for the 3(10)/alpha-helix transition with composition and sequence sensitivity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Models for the 3(10)-helix/coil, pi-helix/coil, and alpha-helix/3(10)-helix/coil transitions in isolated peptides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Water-inserted alpha-helical segments implicate reverse turns as folding intermediates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Views of helical peptides: a proposal for the position of 3(10)-helix along the thermodynamic folding pathway

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Structural characteristics of alpha-helical peptide molecules containing Aib residues

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Critical main-chain length for conformational conversion from 3(10)-helix to alpha-helix in polypeptides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Parameters of helix-coil transition theory for alanine-based peptides of varying chain lengths in water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Equilibrium NMR studies of unfolded and partially folded proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Structures of the HIV-1 capsid protein dimerization domain at 2.6 A resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Defining the core structure of the α-lactalbumin molten globule state 1 1Edited by C. R. Matthews

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Crystal structure of human UP1, the domain of hnRNP A1 that contains two RNA-recognition motifs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Mapping the pro-region of carboxypeptidase B by protein engineering. Cloning, overexpression, and mutagenesis of the porcine proenzyme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Critical role for the 310 helix region of p57(Kip2) in cyclin-dependent kinase 2 inhibition and growth suppression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

The DNA Helix and How it is Read

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

7 January 2021

The Protein Data Bank

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https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Selection of representative protein data sets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

Satisfying hydrogen bonding potential in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2901338-4

10.1016/S0022-2836(02)01338-4

7 January 2021

Identifiers

DOI

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1 December 2017

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