(Q44530791)

3 December 2017

title

Sequence specific DNA binding of Ets-1 transcription factor: molecular dynamics study on the Ets domain--DNA complexes (English)

1 reference

3 December 2017

Satoshi Obika

1

1 reference

3 December 2017

Swarnalatha Y Reddy

series ordinal

2

1 reference

3 December 2017

Thomas C Bruice

series ordinal

3

1 reference

3 December 2017

language of work or name

English

0 references

publication date

1 August 2003

1 reference

Journal of Molecular Biology

3 December 2017

published in

1 reference

3 December 2017

volume

331

1 reference

3 December 2017

issue

2

1 reference

3 December 2017

page(s)

345-359

1 reference

The Ets family contains transcriptional activators and repressors involved in angiogenesis.

3 December 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

The ETS-domain transcription factor family

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

The Ets family of transcription factors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Ets transcription factors and human disease

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Structural studies of Ets-1/Pax5 complex formation on DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Structure of the elk-1-DNA complex reveals how DNA-distal residues affect ETS domain recognition of DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Structures of SAP-1 Bound to DNA Targets from the E74 and c-fos Promoters

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

A new pattern for helix-turn-helix recognition revealed by the PU.1 ETS-domain-DNA complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

New insights on DNA recognition by ets proteins from the crystal structure of the PU.1 ETS domain-DNA complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Solution structure of the ets domain of Fli-1 when bound to DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

The solution structure of the human ETS1-DNA complex reveals a novel mode of binding and true side chain intercalation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Correction of the NMR structure of the ETS1/DNA complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Bending of DNA by asymmetric charge neutralization: all-atom energy simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

DNA bending by asymmetric phosphate neutralization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Role of asymmetric phosphate neutralization in DNA bending by PU.1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

The GROMOS Biomolecular Simulation Program Package

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Molecular dynamics simulations of biomolecules: long-range electrostatic effects

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Simulations of nucleic acids and their complexes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

An inhibitory carboxyl-terminal domain in Ets-1 and Ets-2 mediates differential binding of ETS family factors to promoter sequences of the mb-1 gene

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Characterization of the cooperative function of inhibitory sequences in Ets-1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Modulation of transcription factor Ets-1 DNA binding: DNA-induced unfolding of an alpha helix

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

A novel modulator domain of Ets transcription factors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Anisotropic flexibility of DNA and the nucleosomal structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Optimised parameters for A-DNA and B-DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Simulations of proteins in water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

DNA bending: the prevalence of kinkiness and the virtues of normality

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Indirect readout of the trp-repressor-operator complex by B-DNA's backbone conformation transitions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Sequence selectivity and degeneracy of a restriction endonuclease mediated by DNA intercalation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: DNA binding specificity based on energetics of DNA kinking

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: alteration of DNA binding specificity through alteration of DNA kinking

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

The name is bond--H bond.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

DNA binding specificity studies of four ETS proteins support an indirect read-out mechanism of protein-DNA recognition.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

All-atom empirical potential for molecular modeling and dynamics studies of proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Comparison of simple potential functions for simulating liquid water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Computer "Experiments" on Classical Fluids. I. Thermodynamical Properties of Lennard-Jones Molecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Raster3D: photorealistic molecular graphics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

Conic: a fast renderer for space-filling molecules with shadows

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900726-5

10.1016/S0022-2836(03)00726-5

7 January 2021

Identifiers

DOI

1 reference

3 December 2017

1 reference