(Q45328743)

English

Rapid evolution by positive selection and gene gain and loss: PLA(2) venom genes in closely related Sistrurus rattlesnakes with divergent diets

scientific article published on 6 February 2008

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

13 December 2017

Rapid evolution by positive selection and gene gain and loss: PLA(2) venom genes in closely related Sistrurus rattlesnakes with divergent diets (English)

1 reference

Europe PubMed Central

PubMed publication ID

13 December 2017

0 references

rapid evolution

1 reference

based on heuristic

inferred from title

author name string

H Lisle Gibbs

1

1 reference

Europe PubMed Central

PubMed publication ID

13 December 2017

Wayne Rossiter

2

1 reference

Europe PubMed Central

PubMed publication ID

13 December 2017

publication date

6 February 2008

1 reference

Europe PubMed Central

PubMed publication ID

13 December 2017

Journal of Molecular Evolution

1 reference

Europe PubMed Central

PubMed publication ID

13 December 2017

66

1 reference

Europe PubMed Central

PubMed publication ID

13 December 2017

2

1 reference

Europe PubMed Central

PubMed publication ID

13 December 2017

151-166

1 reference

Europe PubMed Central

PubMed publication ID

13 December 2017

https://scigraph.springernature.com/pub.10.1007/s00239-008-9067-7

0 references

The structural basis of molecular adaptation

1 reference

https://api.crossref.org/works/10.1007%2FS00239-008-9067-7

21 January 2018

ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling

1 reference

https://api.crossref.org/works/10.1007%2FS00239-008-9067-7

21 January 2018

Perspective: Evolutionary developmental biology and the problem of variation

1 reference

https://api.crossref.org/works/10.1007%2FS00239-008-9067-7

21 January 2018

Protein Identification and Analysis Tools on the ExPASy Server

1 reference

https://api.crossref.org/works/10.1007%2FS00239-008-9067-7

21 January 2018

Early evolution of the venom system in lizards and snakes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inventing an arsenal: adaptive evolution and neofunctionalization of snake venom phospholipase A2 genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Venom proteomes of closely related Sistrurus rattlesnakes with divergent diets.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Eggs-only diet: its implications for the toxin profile changes and ecology of the marbled sea snake (Aipysurus eydouxii).

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inferring species trees from gene trees: a phylogenetic analysis of the Elapidae (Serpentes) based on the amino acid sequences of venom proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The locus of evolution: evo devo and the genetics of adaptation

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic and ecological correlates of intraspecific variation in pitviper venom composition detected using matrix-assisted laser desorption time-of-flight mass spectrometry (MALDI-TOF-MS) and isoelectric focusing

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A survey of gene expression and diversity in the venom glands of the pitviper snake Bothrops insularis through the generation of expressed sequence tags (ESTs).

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accelerated evolution and molecular surface of venom phospholipase A2 enzymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Locus-specific conservation of the HLA class I introns by intra-locus homogenization

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accelerated evolution in the protein-coding regions is universal in crotalinae snake venom gland phospholipase A2 isozyme genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution of myotoxic phospholipases A2 from snake venom.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CONFIDENCE LIMITS ON THE MAXIMUM-LIKELIHOOD ESTIMATE OF THE HOMINOID TREE FROM MITOCHONDRIAL-DNA SEQUENCES.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assembling an arsenal: origin and evolution of the snake venom proteome inferred from phylogenetic analysis of toxin sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GeneTree: comparing gene and species phylogenies using reconciled trees.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary and ecological functional genomics.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of rattlesnakes (Viperidae; Crotalus) in the warm deserts of western North America shaped by Neogene vicariance and Quaternary climate change

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Resistance of eels (Gymnothorax) to the venom of sea kraits (Laticauda colubrina): a test of coevolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Venom phospholipases A2 of bamboo viper (Trimeresurus stejnegeri): molecular characterization, geographic variations and evidence of multiple ancestries

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

From genome to "venome": molecular origin and evolution of the snake venom proteome inferred from phylogenetic analysis of toxin sequences and related body proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantifying the accessible surface area of protein residues in their local environment.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The three-dimensional structures of two toxins from snake venom throw light on the anticoagulant and neurotoxic sites of phospholipase A2

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The refined crystal structure of dimeric phospholipase A2 at 2.5 A. Access to a shielded catalytic center

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution and phylogeny of elapid snake venom three-finger toxins

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nonsynonymous substitution in abalone sperm fertilization genes exceeds substitution in introns and mitochondrial DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bayes empirical bayes inference of amino acid sites under positive selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The C-terminal region of ammodytoxins is important but not sufficient for neurotoxicity

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolutionary demography of duplicate genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accelerated evolution of Trimeresurus flavoviridis venom gland phospholipase A2 isozymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regional evolution of venom-gland phospholipase A2 isoenzymes of Trimeresurus flavoviridis snakes in the southwestern islands of Japan.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Concerted and birth-and-death evolution of multigene families

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rates and patterns of gene duplication and loss in the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inference of selection from multiple species alignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DnaSP, DNA polymorphism analyses by the coalescent and other methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positive Darwinian selection in Vipera palaestinae phospholipase A2 genes is unexpectedly limited to the third exon

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Geographic variations, cloning, and functional analyses of the venom acidic phospholipases A2 of Crotalus viridis viridis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accelerated evolution of Trimeresurus okinavensis venom gland phospholipase A2 isozyme-encoding genes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolution of mammalian gene families

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MODELTEST: testing the model of DNA substitution

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Lachesis muta (Viperidae) cDNAs reveal diverging pit viper molecules and scaffolds typical of cobra (Elapidae) venoms: implications for snake toxin repertoire evolution.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence and crystal structure determination of a basic phospholipase A2 from common krait (Bungarus caeruleus) at 2.4 A resolution: identification and characterization of its pharmacological sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Diet and snake venom evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative evolutionary rates of introns and exons in murine rodents

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure-function relationships and mechanism of anticoagulant phospholipase A2 enzymes from snake venoms

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolutionary fate and consequences of duplicate genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution and structure-function relationships of crotoxin-like and asparagine-6-containing phospholipases A2 in pit viper venoms

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A model to explain the pharmacological effects of snake venom phospholipases A2.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Putting the brakes on snake venom evolution: the unique molecular evolutionary patterns of Aipysurus eydouxii (Marbled sea snake) phospholipase A2 toxins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Neutralizing interaction between heparins and myotoxin II, a lysine 49 phospholipase A2 from Bothrops asper snake venom. Identification of a heparin-binding and cytolytic toxin region by the use of synthetic peptides and molecular modeling.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of basic phospholipase A2 from Agkistrodon halys Pallas: implications for its association, hemolytic and anticoagulant activities

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phenylalanine-24 in the N-terminal region of ammodytoxins is important for both enzymic activity and presynaptic toxicity

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic sequences encoding the acidic and basic subunits of Mojave toxin: unusually high sequence identity of non-coding regions

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Charge reversal of ammodytoxin A, a phospholipase A2-toxin, does not abolish its neurotoxicity

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Excitement ahead: structure, function and mechanism of snake venom phospholipase A2 enzymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prey specificity, comparative lethality and compositional differences of coral snake venoms

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interisland evolution of Trimeresurus flavoviridis venom phospholipase A(2) isozymes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18253686

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-008-9067-7

1 reference

Europe PubMed Central

PubMed publication ID

13 December 2017

Dimensions Publication ID

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PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

13 December 2017

ResearchGate publication ID

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