(Q45994154)

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1 March 2020

title

GATA simple sequence repeats function as enhancer blocker boundaries (English)

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1 March 2020

5

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1 March 2020

Jaya Krishnan

2

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1 March 2020

author name string

Ram P Kumar

1

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1 March 2020

Narendra Pratap Singh

3

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1 March 2020

Lalji Singh

4

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1 March 2020

language of work or name

English

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publication date

1 January 2013

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1 March 2020

published in

Nature Communications

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1 March 2020

volume

4

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1 March 2020

page(s)

1844

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https://scigraph.springernature.com/pub.10.1038/ncomms2872

1 March 2020

exact match

0 references

cites work

Epigenetic regulation of genes during development: a conserved theme from flies to mammals.

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A bipartite sequence element associated with matrix/scaffold attachment regions

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Evx2-Hoxd13 intergenic region restricts enhancer association to Hoxd13 promoter

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Transgene Coplacement and high efficiency site-specific recombination with the Cre/loxP system in Drosophila.

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Fab-7 functions as a chromatin domain boundary to ensure proper segment specification by the Drosophila bithorax complex.

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Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions

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The conserved nucleotide sequences of Bkm, which define Sxr in the mouse, are transcribed

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Chromatin insulators and boundaries: effects on transcription and nuclear organization

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CUG repeat binding protein (CUGBP1) interacts with the 5' region of C/EBPbeta mRNA and regulates translation of C/EBPbeta isoforms

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Repeat performance: how do genome packaging and regulation depend on simple sequence repeats?

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The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes

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Genome-wide analysis of Bkm sequences (GATA repeats): predominant association with sex chromosomes and potential role in higher order chromatin organization and function

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Chromatin loops are selectively anchored using scaffold/matrix-attachment regions

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GAGA protein: a multi-faceted transcription factor

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Nuclear scaffold/matrix attached region modules linked to a transcription unit are sufficient for replication and maintenance of a mammalian episome

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The Mcp element from the bithorax complex contains an insulator that is capable of pairwise interactions and can facilitate enhancer-promoter communication

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Polycomb and trithorax group proteins mediate the function of a chromatin insulator.

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Chromatin domain boundaries in the Bithorax complex

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ATR-X syndrome protein targets tandem repeats and influences allele-specific expression in a size-dependent manner.

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P-element-mediated enhancer detection: a versatile method to study development in Drosophila.

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SATB1 packages densely looped, transcriptionally active chromatin for coordinated expression of cytokine genes.

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Idefix insulator activity can be modulated by nearby regulatory elements

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Simple sequence repeats as a source of quantitative genetic variation

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12 December 2020

The enhancer-blocking activity of the Fab-7 boundary from the Drosophila bithorax complex requires GAGA-factor-binding sites.

1 reference

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Genetic and molecular analysis of the gypsy chromatin insulator of Drosophila

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Reconfiguration of genomic anchors upon transcriptional activation of the human major histocompatibility complex

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A test of insulator interactions in Drosophila.

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The su(Hw) protein insulates expression of the Drosophila melanogaster white gene from chromosomal position-effects.

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Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis

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A BEAF dependent chromatin domain boundary separates myoglianin and eyeless genes of Drosophila melanogaster

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12 December 2020

A 5' element of the chicken beta-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila

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Probing long-distance regulatory interactions in the Drosophila melanogaster bithorax complex using Dam identification.

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H3K9 methylation and RNA interference regulate nucleolar organization and repeated DNA stability

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Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing

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Centromere assembly and propagation

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A chromatin insulator determines the nuclear localization of DNA.

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Initial sequencing and analysis of the human genome

1 reference

12 December 2020

Identifiers

DOI

10.1038/NCOMMS2872

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23673629%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

1 March 2020

ADS bibcode

2013NatCo...4.1844K

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1031407144

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