(Q46518982)

22 December 2017

title

Statistical analysis of DNA duplex structural features (English)

1 reference

22 December 2017

0 references

Ulyanov NB

1

1 reference

22 December 2017

James TL

series ordinal

2

1 reference

22 December 2017

language of work or name

English

0 references

publication date

1 January 1995

1 reference

22 December 2017

published in

Methods in Enzymology

1 reference

22 December 2017

volume

261

1 reference

22 December 2017

page(s)

90-120

1 reference

22 December 2017

DNA conformation and protein binding

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Effect of non-contacted bases on the affinity of 434 operator for 434 repressor and Cro

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Synthetic curved DNA sequences can act as transcriptional activators in Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Solution structure of the EcoRI DNA octamer containing 5-fluorouracil via restrained molecular dynamics using distance and torsion angle constraints extracted from NMR spectral simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Structural characterization of an N-acetyl-2-aminofluorene (AAF) modified DNA oligomer by NMR, energy minimization, and molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Base pairing geometry in GA mismatches depends entirely on the neighboring sequence

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Thermodynamic stability and solution conformation of tandem G.A mismatches in RNA and RNA.DNA hybrid duplexes

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Effects of base sequence on the loop folding in DNA hairpins

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

The solution structure of the hairpin formed by d(TCTCTC-TTT-GAGAGA)

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Solution structure of the parallel-stranded hairpin d(T8<text text>C4A8) as determined by two-dimensional NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Strand orientation in the DNA quadruplex formed from the Oxytricha telomere repeat oligonucleotide d(G4T4G4) in solution.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Solution structure of a parallel-stranded G-quadruplex DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

A DNA aptamer which binds to and inhibits thrombin exhibits a new structural motif for DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Three-dimensional solution structure of the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG)

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

The DNA strand in DNA.RNA hybrid duplexes is neither B-form nor A-form in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

NMR assignments and solution conformation of the DNA.RNA hybrid duplex d(GTGAACTT).r(AAGUUCAC)

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Structural study of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety by NMR: extraction of distance and torsion angle constraints and imino proton exchange rates

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Structural effects of the C2-methylhypoxanthine:cytosine base pair in B-DNA: A combined NMR and X-ray diffraction study of d(CGC[m2I]AATTCGCG).

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Determination of the NMR solution structure of the Hoechst 33258-d(GTGGAATTCCAC)2 complex and comparison with the X-ray crystal structure

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Termination of photoreceptor responses

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Structure of the complex of lac repressor headpiece and an 11 base-pair half-operator determined by nuclear magnetic resonance spectroscopy and restrained molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

DNA recognition by the oestrogen receptor: from solution to the crystal

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

The solution structures of the trp repressor-operator DNA complex

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Determining local conformational variations in DNA. Nuclear magnetic resonance structures of the DNA duplexes d(CGCCTAATCG) and d(CGTCACGCGC) generated using back-calculation of the nuclear Overhauser effect spectra, a distance geometry algorithm an

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

How accurately can oligonucleotide structures be determined from the hybrid relaxation rate matrix/NOESY distance restrained molecular dynamics approach?

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Systematic study of nuclear Overhauser effects vis-à-vis local helical parameters, sugar puckers, and glycosidic torsions in B DNA: insensitivity of NOE to local transitions in B DNA oligonucleotides due to internal structural compensations

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

An assessment of the precision and accuracy of protein structures determined by NMR. Dependence on distance errors.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Solution structure of the octamer motif in immunoglobulin genes via restrained molecular dynamics calculations

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Solution structure of a DNA octamer containing the Pribnow box via restrained molecular dynamics simulation with distance and torsion angle constraints derived from two-dimensional nuclear magnetic resonance spectral fitting

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Solution structure of [d(GTATATAC)]2 via restrained molecular dynamics simulations with nuclear magnetic resonance constraints derived from relaxation matrix analysis of two-dimensional nuclear Overhauser effect experiments

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Simulation of interactions between nucleic acid bases by refined atom-atom potential functions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Metropolis Monte Carlo calculations of DNA structure using internal coordinates and NMR distance restraints: an alternative method for generating a high-resolution solution structure.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Solution structure of the TnAn DNA duplex GCCGTTAACGCG containing the HpaI restriction site

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Solution structure of [d(GCGTATACGC)]2

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Three-dimensional solution structure of a DNA duplex containing the BclI restriction sequence: two-dimensional NMR studies, distance geometry calculations, and refinement by back-calculation of the NOESY spectrum

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Determination of nucleic acid backbone conformation by 1H NMR

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Solution conformation of purine-pyrimidine DNA octamers using nuclear magnetic resonance, restrained molecular dynamics and NOE-based refinement

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Solution structure of phage lambda half-operator DNA by use of NMR, restrained molecular dynamics, and NOE-based refinement

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Two-stranded helical configurations for ribonucleic acid

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

The geometry of nucleic acids

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

A rigorous basepair oriented description of DNA structures

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Defining the structure of irregular nucleic acids: conventions and principles

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Local variability and base sequence effects in DNA crystal structures.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Nucleic acid structure analysis. Mathematics for local Cartesian and helical structure parameters that are truly comparable between structures.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

The fine structure of two DNA dodecamers containing the cAMP responsive element sequence and its inverse. Nuclear magnetic resonance and molecular simulation studies.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Analysis of local helix geometry in three B-DNA decamers and eight dodecamers

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Mechanics of sequence-dependent stacking of bases in B-DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Sequence-dependent DNA structure. The role of base stacking interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Conformational sub-states in B-DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Base sequence and helix structure variation in B and A DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Sequence dependence of the helical repeat of DNA in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Sequence-dependent helical periodicity of DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Alternative structures for alternating poly(dA-dT) tracts: the structure of the B-DNA decamer C-G-A-T-A-T-A-T-C-G

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Optimised parameters for A-DNA and B-DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Determinants of repressor/operator recognition from the structure of the trp operator binding site.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Crystal structure of trp repressor/operator complex at atomic resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Anisotropic flexibility of DNA and the nucleosomal structure

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Base sequence effects in double helical DNA. I. Potential energy estimates of local base morphology

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

The crystal structure of the trigonal decamer C-G-A-T-C-G-6meA-T-C-G: a B-DNA helix with 10.6 base-pairs per turn

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Sequence-dependent anisotropic flexibility of B-DNA. A conformational study

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Sequence periodicities in chicken nucleosome core DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

In vitro evolution of intrinsically bent DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

A hypothesis on a specific sequence-dependent conformation of DNA and its relation to the binding of the lac-repressor protein

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Decreased interstrand H2-H1' distance in the GC-rich part of the duplex d(CCTCAAACTCC).d(GGAGTTTGAGG) in solution at low temperature: proton nuclear magnetic resonance investigation

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

A potential gene target in HIV-1: rationale, selection of a conserved sequence, and determination of NMR distance and torsion angle constraints

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Molecular dynamics with weighted time-averaged restraints for a DNA octamer. Dynamic interpretation of nuclear magnetic resonance data

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Probability assessment of conformational ensembles: sugar repuckering in a DNA duplex in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

1 reference

7 January 2021

Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

Helical periodicity of DNA, Poly(dA) . poly(dT) and poly(dA-dT). poly(dA-dT) in solution.

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2895%2961006-5

7 January 2021

10.1016/S0076-6879(95)61006-5

Identifiers

DOI

1 reference

22 December 2017

1 reference

22 December 2017