(Q46879058)

26 December 2017

title

Computer simulations of the translocation and unfolding of a protein pulled mechanically through a pore (English)

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26 December 2017

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Lei Huang

1

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26 December 2017

Serdal Kirmizialtin

series ordinal

2

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26 December 2017

Dmitrii E Makarov

series ordinal

3

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26 December 2017

language of work or name

English

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publication date

1 September 2005

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26 December 2017

Journal of Chemical Physics

published in

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26 December 2017

volume

123

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26 December 2017

issue

12

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26 December 2017

page(s)

124903

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26 December 2017

Protein unfolding--an important process in vivo?

cites work

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Protein unfolding in the cell

21 January 2018

1 reference

ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal

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Linkage between ATP consumption and mechanical unfolding during the protein processing reactions of an AAA+ degradation machine.

21 January 2018

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Finding a protein's Achilles heel

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The force exerted by the membrane potential during protein import into the mitochondrial matrix

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Mechanical processes in biochemistry

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Simulation of the mechanical unfolding of ubiquitin: probing different unfolding reaction coordinates by changing the pulling geometry

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The mechanical stability of ubiquitin is linkage dependent

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1 reference

Pulling geometry defines the mechanical resistance of a beta-sheet protein

21 January 2018

1 reference

The nature of folded states of globular proteins

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Matching simulation and experiment: a new simplified model for simulating protein folding

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Protein engineering study of protein L by simulation

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Intermediates and the folding of proteins L and G.

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Theory of sequence effects on DNA translocation through proteins and nanopores.

21 January 2018

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Polymer translocation through a nanopore. II. Excluded volume effect.

21 January 2018

1 reference

Driven polymer translocation through a narrow pore

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1 reference

Force-clamp spectroscopy monitors the folding trajectory of a single protein

21 January 2018

1 reference

The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques

21 January 2018

1 reference

Steered molecular dynamics and mechanical functions of proteins

21 January 2018

1 reference

Molecular dynamics study of unbinding of the avidin-biotin complex

21 January 2018

1 reference

Reconstructing potential energy functions from simulated force-induced unbinding processes

21 January 2018

1 reference

Accelerated folding in the weak hydrophobic environment of a chaperonin cavity: creation of an alternate fast folding pathway

21 January 2018

1 reference

Native topology determines force-induced unfolding pathways in globular proteins

21 January 2018

1 reference

Replica-exchange molecular dynamics method for protein folding

21 January 2018

1 reference

Nanometer-scale pores: potential applications for analyte detection and DNA characterization

21 January 2018

1 reference

Characterization of individual polynucleotide molecules using a membrane channel

21 January 2018

1 reference

Partitioning of a polymer into a nanoscopic protein pore obeys a simple scaling law.

21 January 2018

1 reference

Partitioning of individual flexible polymers into a nanoscopic protein pore

21 January 2018

1 reference

Translocation of botulinum neurotoxin light chain protease through the heavy chain channel

21 January 2018

1 reference

The chloroplast protein import channel Toc75: pore properties and interaction with transit peptides

21 January 2018

1 reference

Models for the Specific Adhesion of Cells to Cells

21 January 2018

1 reference

Mechanical and chemical unfolding of a single protein: a comparison

21 January 2018

1 reference

Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 A resolution

21 January 2018

1 reference

Probing distance and electrical potential within a protein pore with tethered DNA

21 January 2018

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Mitochondria Unfold Precursor Proteins by Unraveling Them From Their N-termini

21 January 2018

1 reference

Dynamics of polynucleotide transport through nanometre-scale pores

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1063/1.2008231

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26 December 2017

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26 December 2017