(Q46956176)

English

Strong heterogeneity in nucleotidic composition and codon bias in the pea aphid (Acyrthosiphon pisum) shown by EST-based coding genome reconstruction

scientific article published on 10 October 2007

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scholarly article

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Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

Strong heterogeneity in nucleotidic composition and codon bias in the pea aphid (Acyrthosiphon pisum) shown by EST-based coding genome reconstruction (English)

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

Acyrthosiphon pisum

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1 reference

based on heuristic

inferred from title

4

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

author name string

Claude Rispe

1

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

Fabrice Legeai

2

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

Jean-Pierre Gauthier

3

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

publication date

10 October 2007

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

Journal of Molecular Evolution

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Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

65

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Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

4

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

413-424

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

https://scigraph.springernature.com/pub.10.1007/s00239-007-9023-y

0 references

Hill-Robertson interference is a minor determinant of variations in codon bias across Drosophila melanogaster and Caenorhabditis elegans genomes.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-007-9023-Y

21 January 2018

Accounting for background nucleotide composition when measuring codon usage bias.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-007-9023-Y

21 January 2018

Functional adaptation of tRNA population

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting tran

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative genomics of nematodes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A comparison of homologous developmental genes from Drosophila and Tribolium reveals major differences in length and trinucleotide repeat content

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolution of biased codon and amino acid usage in nematode genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The signature of selection mediated by expression on human genes

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https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

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Translational selection and yeast proteome evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

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Use and misuse of correspondence analysis in codon usage studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

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No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The selection-mutation-drift theory of synonymous codon usage

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

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Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solving the riddle of codon usage preferences: a test for translational selection

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Compositional correlations in the chicken genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

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A computer program for aligning a cDNA sequence with a genomic DNA sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

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Coexistence between cyclical parthenogens, obligate parthenogens, and intermediates in a fluctuating environment

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

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Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon selection in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular evolution between Drosophila melanogaster and D. simulans: reduced codon bias, faster rates of amino acid substitution, and larger proteins in D. melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The relationship between third-codon position nucleotide content, codon bias, mRNA secondary structure and gene expression in the drosophilid alcohol dehydrogenase genes Adh and Adhr

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Large-scale gene discovery in the pea aphid Acyrthosiphon pisum (Hemiptera)

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The 'effective number of codons' used in a gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of codon usage bias in Drosophila

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variation in the strength of selected codon usage bias among bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The nonrandom location of synonymous codons suggests that reading frame-independent forces have patterned codon preferences

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

FrameD: A flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage patterns in chromosomal and retrotransposon genes of the mosquito Anopheles gambiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

"Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CAP3: A DNA sequence assembly program

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative genomics of Anopheles gambiae and Drosophila melanogaster

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accounting for background nucleotide composition when measuring codon usage bias: brilliant idea, difficult in practice.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Local stability of DNA and RNA secondary structure and its relation to biological functions

1 reference

https://pubmed.ncbi.nlm.nih.gov/17928936

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-007-9023-Y

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 December 2017

http://europepmc.org/abstract/MED/17928936

ResearchGate publication ID

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