(Q47208462)

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Organic anion transporting polypeptides of the OATP/SLCO superfamily: identification of new members in nonmammalian species, comparative modeling and a potential transport mode.

scientific article published in December 2005

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scholarly article

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20 January 2020

Organic anion transporting polypeptides of the OATP/SLCO superfamily: identification of new members in nonmammalian species, comparative modeling and a potential transport mode (English)

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16648940%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

Kenji Mizuguchi

3

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20 January 2020

author name string

Fabienne Meier-Abt

1

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20 January 2020

Younes Mokrab

2

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20 January 2020

publication date

1 December 2005

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20 January 2020

Journal of Membrane Biology

1 reference

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20 January 2020

208

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20 January 2020

3

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20 January 2020

213-227

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20 January 2020

https://scigraph.springernature.com/pub.10.1007/s00232-005-7004-x

0 references

Structure and mechanism of the lactose permease of Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

1 reference

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12 December 2020

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Mutations in the SLCO1B3 gene affecting the substrate specificity of the hepatocellular uptake transporter OATP1B3 (OATP8).

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Electrostatics of nanosystems: application to microtubules and the ribosome

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12 December 2020

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Crystallization of the Fab fragment of a monoclonal anti-digoxin antibody and its complex with digoxin

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Molecular identification and characterization of novel members of the human organic anion transporter (OATP) family

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Rifamycin SV and rifampicin exhibit differential inhibition of the hepatic rat organic anion transporting polypeptides, Oatp1 and Oatp2.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Structural conservation in the major facilitator superfamily as revealed by comparative modeling

1 reference

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12 December 2020

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Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Expression cloning of a rat liver Na(+)-independent organic anion transporter

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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HOMSTRAD: a database of protein structure alignments for homologous families

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Structure and mechanism of the glycerol-3-phosphate transporter from Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Molecular cloning, characterization and expression of a novel serine proteinase inhibitor gene in bay scallops (Argopecten irradians, Lamarck 1819).

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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3D-Jury: a simple approach to improve protein structure predictions

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Three-dimensional structure of the complex between pancreatic secretory trypsin inhibitor (Kazal type) and trypsinogen at 1.8 A resolution. Structure solution, crystallographic refinement and preliminary structural interpretation

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Genetic polymorphisms of human organic anion transporters OATP-C (SLC21A6) and OATP-B (SLC21A9): allele frequencies in the Japanese population and functional analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Identification of phalloidin uptake systems of rat and human liver

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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The Universal Protein Resource (UniProt)

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Polymorphisms in OATP-C: identification of multiple allelic variants associated with altered transport activity among European- and African-Americans

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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ViTO: tool for refinement of protein sequence-structure alignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Enterohepatic bile salt transporters in normal physiology and liver disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Assessment of protein models with three-dimensional profiles

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Characterization of an organic anion-transporting polypeptide (OATP-B) in human placenta

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

based on heuristic

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Pharmacogenomics of organic anion-transporting polypeptides (OATP).

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Transport of xenobiotics across the blood-brain barrier

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

based on heuristic

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Transport of bile acids in hepatic and non-hepatic tissues.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

based on heuristic

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An evolutionary trace method defines binding surfaces common to protein families

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

based on heuristic

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JOY: protein sequence-structure representation and analysis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

based on heuristic

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Profile hidden Markov models

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

based on heuristic

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Identification of steroid sulfate transport processes in the human mammary gland

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

based on heuristic

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Bile salt transporters

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

based on heuristic

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Mammalian and bacterial sugar transport proteins are homologous

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Modeller: generation and refinement of homology-based protein structure models

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Organic anion transporting polypeptides expressed in liver and brain mediate uptake of microcystin

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https://pubmed.ncbi.nlm.nih.gov/16648940

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12 December 2020

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Improved protein-ligand docking using GOLD

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Hepatic uptake of cholecystokinin octapeptide by organic anion-transporting polypeptides OATP4 and OATP8 of rat and human liver

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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The Pfam protein families database

1 reference

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12 December 2020

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Organic anion transporting polypeptides of the OATP/ SLC21 family: phylogenetic classification as OATP/ SLCO superfamily, new nomenclature and molecular/functional properties

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

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Molecular and functional characterization of an organic anion transporting polypeptide cloned from human liver

1 reference

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FFAS03: a server for profile--profile sequence alignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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Recognition of errors in three-dimensional structures of proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

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1 reference

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Critical assessment of methods of protein structure prediction (CASP)-round V.

1 reference

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1 reference

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The classification of amino acid conservation.

1 reference

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RASMOL: biomolecular graphics for all

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

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1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

based on heuristic

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Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://pubmed.ncbi.nlm.nih.gov/16648940

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00232-005-7004-X

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16648940%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16648940%20AND%20SRC:MED&resulttype=core&format=json

20 January 2020

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