(Q47241007)

12 January 2018

title

Limits of Bayesian skyline plot analysis of mtDNA sequences to infer historical demographies in Pacific herring (and other species). (English)

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12 January 2018

author name string

W Stewart Grant

1

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12 January 2018

Ming Liu

2

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12 January 2018

TianXiang Gao

3

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12 January 2018

Takashi Yanagimoto

4

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12 January 2018

publication date

26 June 2012

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12 January 2018

Molecular Phylogenetics and Evolution

number of pages

10

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based on heuristic

inferred from page(s)

published in

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12 January 2018

volume

65

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12 January 2018

page(s)

203-212

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12 January 2018

issue

1

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12 January 2018

Genetic structure and history of populations of the deep-sea fish Helicolenus dactylopterus (Delaroche, 1809) inferred from mtDNA sequence analysis

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Signature of an early genetic bottleneck in a population of Moroccan sardines (Sardina pilchardus).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Ice-age survival of Atlantic cod: agreement between palaeoecology models and genetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Shallow mtDNA coalescence in Atlantic pygmy angelfishes (genus Centropyge) indicates a recent invasion from the Indian Ocean.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Multiple ice-age refugia in Pacific cod, Gadus macrocephalus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Intraspecific phylogeographic genomics from multiple complete mtDNA genomes in Atlantic cod (Gadus morhua): origins of the "codmother," transatlantic vicariance and midglacial population expansion

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Don't forget the ancestral polymorphisms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Contrasting demographic history and phylogeographical patterns in two Indo-Pacific gastropods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Expansion dating: calibrating molecular clocks in marine species from expansions onto the Sunda Shelf Following the Last Glacial Maximum.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Late-Quaternary biogeographic scenarios for the brown bear (Ursus arctos), a wild mammal model species

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Historical colonization and demography of the Mediterranean damselfish, Chromis chromis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

BEAST: Bayesian evolutionary analysis by sampling trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Bayesian coalescent inference of past population dynamics from molecular sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Alarm bells for the molecular clock? No support for Ho et al.'s model of time-dependent molecular rate estimates.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

A reevaluation of the Native American mtDNA genome diversity and its bearing on the models of early colonization of Beringia

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Phylogeography of the shanny Lipophrys pholis (Pisces: Blenniidae) in the NE Atlantic records signs of major expansion event older than the last glaciation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Biochemical Genetic Divergence between Atlantic, Clupea harengus, and Pacific, C. pallasi, Herring

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Pleistocene evolutionary history of the Clouded Apollo (Parnassius mnemosyne): genetic signatures of climate cycles and a 'time-dependent' mitochondrial substitution rate.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Characterizing the time dependency of human mitochondrial DNA mutation rate estimates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Arctic oceanic climate in late cenozoic time

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Time dependency of molecular rate estimates and systematic overestimation of recent divergence times

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

The effect of inappropriate calibration: three case studies in molecular ecology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Time-dependent rates of molecular evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Glacial refugia and recolonization pathways in the brown seaweed Fucus serratus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Phylogeographic heterogeneity of the brown macroalga Sargassum horneri (Fucaceae) in the northwestern Pacific in relation to late Pleistocene glaciation and tectonic configurations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Phylogeographic breaks without geographic barriers to gene flow

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Orbital and millennial Antarctic climate variability over the past 800,000 years.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

A three-stage colonization model for the peopling of the Americas

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Links between climate and sea levels for the past three million years

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

The molecular clock runs more slowly in man than in apes and monkeys

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Late Pleistocene divergence and subsequent population expansion of two closely related fish species, Japanese anchovy (Engraulis japonicus) and Australian anchovy (Engraulis australis).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Remarkably low mtDNA control-region diversity and shallow population structure in Pacific cod Gadus macrocephalus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Effects of Pleistocene climatic fluctuations on the phylogeographic and demographic histories of Pacific herring (Clupea pallasii).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Evaluating signatures of glacial refugia for North Atlantic benthic marine taxa

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Evidence for an early opening of the Bering Strait

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Fossil calibration of molecular clocks and the divergence times of geminate species pairs separated by the isthmus of panama

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

The 'Expansion-Contraction' model of Pleistocene biogeography: rocky shores suffer a sea change?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Climate-Ocean Variability and Ecosystem Response in the Northeast Pacific

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

THE BOTTLENECK EFFECT AND GENETIC VARIABILITY IN POPULATIONS

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Testing hypotheses of population structuring in the Northeast Atlantic Ocean and Mediterranean Sea using the common cuttlefish Sepia officinalis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Quantitative prediction of molecular clock and ka/ks at short timescales

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

MODELTEST: testing the model of DNA substitution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Climate control on ancestral population dynamics: insight from Patagonian fish phylogeography

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

mtDNA variation among Greenland Eskimos: the edge of the Beringian expansion

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Genetic population structure in a commercial marine invertebrate with long-lived lecithotrophic larvae: Cucumaria frondosa (Echinodermata: Holothuroidea)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Mitochondrial DNA variation in Northeast Atlantic and Mediterranean populations of Norway lobster, Nephrops norvegicus.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Limited genetic variation and structure in softshell clams (Mya arenaria) across their native and introduced range

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Exploring the demographic history of DNA sequences using the generalized skyline plot

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Phylogeography and historical ecology of the North Atlantic intertidal

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Genetic signature of recent glaciation on populations of a near-shore marine fish species (Syngnathus leptorhynchus).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Mutation rates differ among regions of the mammalian genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

Population genetic structure of the point-head flounder, Cleisthenes herzensteini, in the Northwestern Pacific

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2012.06.006

10.1016/J.YMPEV.2012.06.006

7 January 2021

Identifiers

DOI

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12 January 2018

PubMed ID

22750109

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12 January 2018