(Q48121073)

English

Comparison of the nucleotide sequences of the meta-cleavage pathway genes of TOL plasmid pWW0 from Pseudomonas putida with other meta-cleavage genes suggests that both single and multiple nucleotide substitutions contribute to enzyme evolution

scientific article published in May 1993

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scholarly article

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Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/8510667

Comparison of the nucleotide sequences of the meta-cleavage pathway genes of TOL plasmid pWW0 from Pseudomonas putida with other meta-cleavage genes suggests that both single and multiple nucleotide substitutions contribute to enzyme evolution (English)

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/8510667

Pseudomonas putida

1 reference

based on heuristic

inferred from title

Shigeaki Harayama

1

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/8510667

author name string

M Rekik

2

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/8510667

publication date

1 May 1993

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/8510667

Molecular Genetics and Genomics

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/8510667

239

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/8510667

1-2

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/8510667

81-89

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/8510667

Molecular considerations in the evolution of bacterial genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Theoretical foundations for a quantitative approach to paleogenetics

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plasmid gene organization: naphthalene/salicylate oxidation

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The TOL plasmids: determinants of the catabolism of toluene and the xylenes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spontaneous mutation

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequences of the meta-cleavage pathway enzymes 2-hydroxymuconic semialdehyde dehydrogenase and 2-hydroxymuconic semialdehyde hydrolase from Pseudomonas CF600.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular analysis of regulatory and structural xyl genes of the TOL plasmid pWW53-4.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The meta cleavage operon of TOL degradative plasmid pWW0 comprises 13 genes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA sequencing with chain-terminating inhibitors

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A constant rate of spontaneous mutation in DNA-based microbes

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution in bacteria: evidence for a universal substitution rate in cellular genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolution of multigene families: human haptoglobin genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Location and organization of the dimethylphenol catabolic genes of Pseudomonas CF600.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence of xylE from the TOL pDK1 plasmid and structural comparison with isofunctional catechol-2,3-dioxygenase genes from TOL, pWW0 and NAH7

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA sequence determination of the TOL plasmid (pWW0) xylGFJ genes of Pseudomonas putida: implications for the evolution of aromatic catabolism

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metabolism of toluene and xylenes by Pseudomonas (putida (arvilla) mt-2: evidence for a new function of the TOL plasmid

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The origin of mutants

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The presence of two complete homologous meta pathway operons on TOL plasmid pWW53.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of five genes in the upper-pathway operon of TOL plasmid pWW0 from Pseudomonas putida and identification of the gene products

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

cis-diol dehydrogenases encoded by the TOL pWW0 plasmid xylL gene and the Acinetobacter calcoaceticus chromosomal benD gene are members of the short-chain alcohol dehydrogenase superfamily

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Construction of hybrid xylE genes between the two duplicate homologous genes from TOL plasmid pWW53: comparison of the kinetic properties of the gene products

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete nucleotide sequence and polypeptide analysis of multicomponent phenol hydroxylase from Pseudomonas sp. strain CF600.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence and expression of the catechol 2,3-dioxygenase-encoding gene of phenol-catabolizing Pseudomonas CF600.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence and expression of gene nahH of plasmid NAH7 and homology with gene xylE of TOL pWWO.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete nucleotide sequence of the metapyrocatechase gene on the TOI plasmid of Pseudomonas putida mt-2.

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence analysis of the Pseudomonas putida PpG7 salicylate hydroxylase gene (nahG) and its 3'-flanking region

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary relationships between catabolic pathways for aromatics: conservation of gene order and nucleotide sequences of catechol oxidation genes of pWW0 and NAH7 plasmids

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Directed evolution of a bacterial operon

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Adaptive evolution that requires multiple spontaneous mutations: mutations involving base substitutions

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence divergence and functional constraint in mRNA evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The use of fluorescein isothiocyanate in the determination of the bacterial biomass of grassland soil

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Physical and functional mapping of two cointegrate plasmids derived from RP4 and TOL plasmid pDK1

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Divergent evolution of chloroplast-type ferredoxins

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence and functional analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain CF600

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Physically associated enzymes produce and metabolize 2-hydroxy-2,4-dienoate, a chemically unstable intermediate formed in catechol metabolism via meta cleavage in Pseudomonas putida

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recent development of the neutral theory viewed from the Wrightian tradition of theoretical population genetics

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fidelity mechanisms in DNA replication

1 reference

https://pubmed.ncbi.nlm.nih.gov/8510667

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

8 February 2018

http://europepmc.org/abstract/MED/8510667

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