(Q48133409)

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In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons

scientific article published on 17 June 2005

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Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

In-depth sequence analysis of the tomato chromosome 12 centromeric region: identification of a large CAA block and characterization of pericentromere retrotranposons (English)

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

6

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

author name string

Tae-Jin Yang

1

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

Seunghee Lee

2

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

Song-Bin Chang

3

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

Yeisoo Yu

4

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

Hans de Jong

5

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

publication date

17 June 2005

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

114

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

2

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

103-117

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://api.crossref.org/works/10.1007%2FS00412-005-0342-8

21 January 2018

Consed: a graphical tool for sequence finishing

1 reference

https://api.crossref.org/works/10.1007%2FS00412-005-0342-8

21 January 2018

Terminal-repeat retrotransposons in miniature (TRIM) are involved in restructuring plant genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A centromeric tandem repeat family originating from a part of Ty3/gypsy-retroelement in wheat and its relatives

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

C-terminal domain phosphatase-like family members (AtCPLs) differentially regulate Arabidopsis thaliana abiotic stress signaling, growth, and development.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human artificial chromosomes generated by modification of a yeast artificial chromosome containing both human alpha satellite and single-copy DNA sequences.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence and analysis of the tomato JOINTLESS locus

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A molecular view of plant centromeres

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic definition and sequence analysis of Arabidopsis centromeres

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rice genome organization: the centromere and genome interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic sequence and transcriptional profile of the boundary between pericentromeric satellites and genes on human chromosome arm 10p

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromosomal stability and the DNA double-stranded break connection

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arabidopsis thaliana centromere regions: genetic map positions and repetitive DNA structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base-calling of automated sequencer traces using phred. II. Error probabilities

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence analysis of a functional Drosophila centromere

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Centromeric repetitive DNA sequences in the genus Brassica

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence organization of barley centromeres

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence and analysis of rice chromosome 4.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The large-scale organization of the centromeric region in Beta species

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Telomere-homologous sequences occur near the centromeres of many tomato chromosomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rice (Oryza sativa) centromeric regions consist of complex DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The role of DNA sequence in centromere formation

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Centromere emergence in evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic mapping of tandemly repeated telomeric DNA sequences in tomato (Lycopersicon esculentum)

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular structure of a functional Drosophila centromere

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PipMaker--a web server for aligning two genomic DNA sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Centromeric localization of an S-RNase gene in Petunia hybrida Vilm

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Localization of jointless-2 gene in the centromeric region of tomato chromosome 12 based on high resolution genetic and physical mapping

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular mapping of the centromeres of tomato chromosomes 7 and 9

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The centromere paradox: stable inheritance with rapidly evolving DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Physical arrangement of retrotransposon-related repeats in centromeric regions of wheat

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-resolution pachytene chromosome mapping of bacterial artificial chromosomes anchored by genetic markers reveals the centromere location and the distribution of genetic recombination along chromosome 10 of rice.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Maize centromeres: organization and functional adaptation in the genetic background of oat

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Preparation of tomato meiotic pachytene and mitotic metaphase chromosomes suitable for fluorescence in situ hybridization (FISH)

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Macrostructure of the tomato telomeres

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural features of the rice chromosome 4 centromere

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Insertion preference of maize and rice miniature inverted repeat transposable elements as revealed by the analysis of nested elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Satellite repeats in the functional centromere and pericentromeric heterochromatin of Medicago truncatula

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The size and sequence organization of the centromeric region of arabidopsis thaliana chromosome 5.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Centromere on the move.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization and genetic mapping of simple repeat sequences in the tomato genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of Arabidopsis thaliana ortholog of the human breast cancer susceptibility gene 1: AtBRCA1, strongly induced by gamma rays

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recurrent sites for new centromere seeding

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Paracentromeric sequences on tomato chromosome 6 show homology to human satellite III and to the mammalian CENP-B binding box.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

FISH studies reveal the molecular and chromosomal organization of individual telomere domains in tomato

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A novel repetitive sequence associated with the centromeric regions of Arabidopsis thaliana chromosomes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Near the edge of a chromosome's "black hole"

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Centromeric retroelements and satellites interact with maize kinetochore protein CENH3.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Centromeres: proteins, protein complexes, and repeated domains at centromeres of simple eukaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular characterization of GATA/GACA microsatellite repeats in tomato

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Miropeats: graphical DNA sequence comparisons

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of a maize chromosome 4 centromeric sequence: evidence for an evolutionary relationship with the B chromosome centromere.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-frequency gene transfer from the chloroplast genome to the nucleus

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

JOINTLESS is a MADS-box gene controlling tomato flower abscission zone development

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative Sequence Analysis Reveals Extensive Microcolinearity in the Lateral Suppressor Regions of the Tomato, Arabidopsis, and Capsella Genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

1 reference

https://pubmed.ncbi.nlm.nih.gov/15965704

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00412-005-0342-8

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

9 February 2018

http://europepmc.org/abstract/MED/15965704

ResearchGate publication ID

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