(Q48137501)

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

title

Modeling Protein Excited-state Structures from “Over-length” Chemical Cross-links (English)

1 reference

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

8

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

Chun Tang

9

1 reference

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

author name string

Yue-He Ding

1

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

Zhou Gong

2

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

Xu Dong

3

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

Kan Liu

4

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

Zhu Liu

5

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

Chao Liu

6

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

Si-Min He

7

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

language of work or name

English

0 references

publication date

23 December 2016

1 reference

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

Journal of Biological Chemistry

24 September 2019

number of pages

10

1 reference

based on heuristic

inferred from page(s)

published in

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

volume

292

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

issue

4

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

page(s)

1187-1196

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

Unravelling biological macromolecules with cryo-electron microscopy.

24 September 2019

cites work

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22 May 2018

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Visualizing the Ensemble Structures of Protein Complexes Using Chemical Cross-Linking Coupled with Mass Spectrometry

22 May 2018

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Automated structure modeling of large protein assemblies using crosslinks as distance restraints

22 May 2018

1 reference

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Serum Albumin Domain Structures in Human Blood Serum by Mass Spectrometry and Computational Biology

22 May 2018

1 reference

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Dynamic equilibrium between closed and partially closed states of the bacterial Enzyme I unveiled by solution NMR and X-ray scattering.

22 May 2018

1 reference

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ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity

22 May 2018

1 reference

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Architecture of the RNA polymerase II-Mediator core initiation complex

22 May 2018

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Analysis of nidogen-1/laminin γ1 interaction by cross-linking, mass spectrometry, and computational modeling reveals multiple binding modes

22 May 2018

1 reference

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Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

(14)N(15)N DXMSMS Match program for the automated analysis of LC/ESI-MS/MS crosslinking data from experiments using (15)N metabolically labeled proteins

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

pQuant improves quantitation by keeping out interfering signals and evaluating the accuracy of calculated ratios

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Distance restraints from crosslinking mass spectrometry: mining a molecular dynamics simulation database to evaluate lysine-lysine distances

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

A mass spectrometry-based hybrid method for structural modeling of protein complexes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Cross-link guided molecular modeling with ROSETTA

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

NMR paves the way for atomic level descriptions of sparsely populated, transiently formed biomolecular conformers

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

ThreaDom: extracting protein domain boundary information from multiple threading alignments

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Smooth statistical torsion angle potential derived from a large conformational database via adaptive kernel density estimation improves the quality of NMR protein structures

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Identification of cross-linked peptides from complex samples.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Crosslinking-MS analysis reveals RNA polymerase I domain architecture and basis of rRNA cleavage

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Subunit order of eukaryotic TRiC/CCT chaperonin by cross-linking, mass spectrometry, and combinatorial homology modeling

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Transient, sparsely populated compact states of apo and calcium-loaded calmodulin probed by paramagnetic relaxation enhancement: interplay of conformational selection and induced fit.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Accessing protein conformational ensembles using room-temperature X-ray crystallography

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Solution structure of a minor and transiently formed state of a T4 lysozyme mutant

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Xwalk: computing and visualizing distances in cross-linking experiments

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

The role of dynamic conformational ensembles in biomolecular recognition

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Accurate solution structures of proteins from X-ray data and a minimal set of NMR data: calmodulin-peptide complexes as examples

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Dynamic personalities of proteins

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Open-to-closed transition in apo maltose-binding protein observed by paramagnetic NMR

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Practical aspects of (1)H transverse paramagnetic relaxation enhancement measurements on macromolecules.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Structure of phosphorylated enzyme I, the phosphoenolpyruvate:sugar phosphotransferase system sugar translocation signal protein

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Visualization of transient encounter complexes in protein-protein association.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Experimentally exploring the conformational space sampled by domain reorientation in calmodulin

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Solution structure of the 40,000 Mr phosphoryl transfer complex between the N-terminal domain of enzyme I and HPr

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

The structure of glutamine-binding protein complexed with glutamine at 1.94 A resolution: comparisons with other amino acid binding proteins

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

The crystal structure of glutamine-binding protein from Escherichia coli

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

The first step in sugar transport: crystal structure of the amino terminal domain of enzyme I of the E. coli PEP: sugar phosphotransferase system and a model of the phosphotransfer complex with HPr

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Calmodulin structure refined at 1.7 A resolution

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Subtle dynamics of holo glutamine binding protein revealed with a rigid paramagnetic probe.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

False discovery rate estimation for cross-linked peptides identified by mass spectrometry

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Probability-based shotgun cross-linking sites analysis.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

Key interactions in HIV-1 maturation identified by hydrogen-deuterium exchange.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270465

PRIMUS: a Windows PC-based system for small-angle scattering data analysis

14 August 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M116.761841

Characterization of an Antagonist Interleukin-6 Dimer by Stable Isotope Labeling, Cross-linking, and Mass Spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M116.761841

Detection of a Protein Conformational Equilibrium by Electrospray Ionisation-Ion Mobility-Mass Spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M116.761841

Identification of the calmodulin binding domain of connexin 43

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27994050

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural Probing of a Protein Phosphatase 2A Network by Chemical Cross-Linking and Mass Spectrometry

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27994050

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

2 references

9 February 2018

https://api.crossref.org/v1/works/http://dx.doi.org/10.1074/jbc.M116.761841

24 September 2019

1 reference

9 February 2018

PubMed ID

27994050

1 reference

9 February 2018