(Q48292915)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

title

Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

single cell transcriptomics

8 April 2020

main subject

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Antonio Scialdone

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Blanca Pijuan-Sala

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

David J Jörg

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Richard Tyser

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Carla Mulas

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Jennifer Nichols

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Ludovic Vallier

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Shankar Srinivas

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Benjamin Simons

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Berthold Gottgens

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

John Marioni

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

author name string

Ximena Ibarra-Soria

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Vasileios Ladopoulos

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

Fernando J Calero-Nieto

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

publication date

8 January 2018

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

external data available at URL

8 April 2020

https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-6153

1 reference

A curated database reveals trends in single-cell transcriptomics

11 February 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

volume

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

issue

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

page(s)

127-134

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

8 April 2020

embryo

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

10x Genomics Chromium

1 reference

A curated database reveals trends in single-cell transcriptomics

Let-7 microRNA-dependent control of leukotriene signaling regulates the transition of hematopoietic niche in mice.

7 February 2021

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Model-based branching point detection in single-cell data by K-Branches clustering

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

New insights into the regulation by RUNX1 and GFI1(s) proteins of the endothelial to hematopoietic transition generating primordial hematopoietic cells

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Generating human hematopoietic stem cells in vitro -exploring endothelial to hematopoietic transition as a portal for stemness acquisition

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Resolving early mesoderm diversification through single-cell expression profiling

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Pooling across cells to normalize single-cell RNA sequencing data with many zero counts.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

destiny: diffusion maps for large-scale single-cell data in R.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Epoxyeicosatrienoic acids enhance embryonic haematopoiesis and adult marrow engraftment

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Computational assignment of cell-cycle stage from single-cell transcriptome data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Advances and applications of single-cell sequencing technologies

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Intrinsic regulations in neural fate commitment.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Full-length RNA-seq from single cells using Smart-seq2.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Prostaglandin-modulated umbilical cord blood hematopoietic stem cell transplantation

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Production of hepatocyte-like cells from human pluripotent stem cells.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

STAR: ultrafast universal RNA-seq aligner

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Mesodermal and hematopoietic differentiation from ES and iPS cells

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Generation of multipotent lung and airway progenitors from mouse ESCs and patient-specific cystic fibrosis iPSCs

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Patterning embryos with oscillations: structure, function and dynamics of the vertebrate segmentation clock

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Recruitment of 5' Hoxa genes in the allantois is essential for proper extra-embryonic function in placental mammals

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Vertebrate intestinal endoderm development

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Boundary formation and maintenance in tissue development

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Organogenesis and development of the liver

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Transcriptional control of endothelial cell development.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE).

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Prostaglandin E2 regulates vertebrate haematopoietic stem cell homeostasis

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Germ cell specification in mice

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Lack of the murine homeobox gene Hesx1 leads to a posterior transformation of the anterior forebrain

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Cited1 is a bifunctional transcriptional cofactor that regulates early nephronic patterning

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Irx1 and Irx2 expression in early lung development

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Msg1 and Mrg1, founding members of a gene family, show distinct patterns of gene expression during mouse embryogenesis.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

LYVE1 Marks the Divergence of Yolk Sac Definitive Hemogenic Endothelium from the Primitive Erythroid Lineage.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Diffusion pseudotime robustly reconstructs lineage branching

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Distinct Sources of Hematopoietic Progenitors Emerge before HSCs and Provide Functional Blood Cells in the Mammalian Embryo

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

The formation of proximal and distal definitive endoderm populations in culture requires p38 MAPK activity.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Vasculogenesis in the day 6.5 to 9.5 mouse embryo.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787369

Regionalisation of the endoderm progenitors and morphogenesis of the gut portals of the mouse embryo

14 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41556-017-0013-Z

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S41556-017-0013-Z

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29311656%20AND%20SRC:MED&resulttype=core&format=json

8 April 2020

PubMed publication ID

29311656

1 reference