(Q48590203)

13 February 2018

title

Using MODELTEST and PAUP* to select a model of nucleotide substitution. (English)

1 reference

13 February 2018

author

David Posada

series ordinal

1

1 reference

13 February 2018

publication date

1 February 2003

1 reference

13 February 2018

Current Protocols in Bioinformatics

published in

1 reference

13 February 2018

volume

Chapter 6

1 reference

13 February 2018

page(s)

Unit 6.5

1 reference

13 February 2018

Improved dating of the human/chimpanzee separation in the mitochondrial DNA tree: heterogeneity among amino acid sites.

cites work

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

A new look at the statistical model identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Topological bias and inconsistency of maximum likelihood using wrong models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Model misspecification and probabilistic tests of topology: evidence from empirical data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

The effects of nucleotide substitution model assumptions on estimates of nonparametric bootstrap support.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Exploring among-site rate variation models in a maximum likelihood framework using empirical data: effects of model assumptions on estimates of topology, branch lengths, and bootstrap support

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Evolutionary trees from DNA sequences: a maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Evolution of the mitochondrial cytochrome oxidase II gene in collembola

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Success of maximum likelihood phylogeny inference in the four-taxon case

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

PHYLOGENY ESTIMATION AND HYPOTHESIS TESTING USING MAXIMUM LIKELIHOOD

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Phylogenetic methods come of age: testing hypotheses in an evolutionary context

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Variation in the pattern of nucleotide substitution across sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Different models, different trees: the geographic origin of PTLV-I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Estimation of evolutionary distances between homologous nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

On Information and Sufficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

The effect of branch length variation on the selection of models of molecular evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

MODELTEST: testing the model of DNA substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Selecting the best-fit model of nucleotide substitution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Simple (Wrong) Models for Complex Trees: A Case from Retroviridae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

The general stochastic model of nucleotide substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

A Stochastic Model for the Evolution of Autocorrelated DNA Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Estimating the rate of evolution of the rate of molecular evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Modeling the covarion hypothesis of nucleotide substitution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Phylogenetic relationship among horseshoe crab species: effect of substitution models on phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Among-site rate variation and its impact on phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Performance of likelihood ratio tests of evolutionary hypotheses under inadequate substitution models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Estimation of evolutionary distances between nucleotide sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471250953.BI0605S00

Testing a covariotide model of DNA substitution

21 January 2018

1 reference

5 June 2022

https://opencitations.net/index/coci/api/v1/citations/10.1093/OXFORDJOURNALS.MOLBEV.A004128

Identifiers

DOI

10.1002/0471250953.BI0605S00

1 reference

13 February 2018

PubMed ID

18428705

1 reference

13 February 2018