(Q51540622)

6 April 2018

title

Benchmarking the CATMA microarray. A novel tool for Arabidopsis transcriptome analysis. (English)

1 reference

6 April 2018

0 references

15

1 reference

6 April 2018

Martin Kuiper

18

1 reference

6 April 2018

author name string

Joke Allemeersch

1

1 reference

6 April 2018

Steffen Durinck

2

1 reference

6 April 2018

Rudy Vanderhaeghen

3

1 reference

6 April 2018

Philippe Alard

4

1 reference

6 April 2018

Ruth Maes

5

1 reference

6 April 2018

Kurt Seeuws

6

1 reference

6 April 2018

Tom Bogaert

7

1 reference

6 April 2018

Kathleen Coddens

8

1 reference

6 April 2018

Kirsten Deschouwer

9

1 reference

6 April 2018

Paul Van Hummelen

10

1 reference

6 April 2018

Marnik Vuylsteke

11

1 reference

6 April 2018

Yves Moreau

12

1 reference

6 April 2018

Jeroen Kwekkeboom

13

1 reference

6 April 2018

André H M Wijfjes

14

1 reference

6 April 2018

Jim Beynon

16

1 reference

6 April 2018

Pierre Hilson

17

1 reference

6 April 2018

language of work or name

English

0 references

publication date

1 February 2005

1 reference

6 April 2018

published in

Plant Physiology

1 reference

6 April 2018

volume

137

1 reference

6 April 2018

page(s)

588-601

1 reference

6 April 2018

issue

2

1 reference

6 April 2018

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Bioconductor: open software development for computational biology and bioinformatics

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Functional annotation of the Arabidopsis genome using controlled vocabularies

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Development and evaluation of an Arabidopsis whole genome Affymetrix probe array

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

NASCArrays: a repository for microarray data generated by NASC's transcriptomics service

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Automatic design of gene-specific sequence tags for genome-wide functional studies.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Genomics. Microarrays--guilt by association.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Comparison and meta-analysis of microarray data: from the bench to the computer desk.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Evaluation of gene expression measurements from commercial microarray platforms

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

European consortia building integrated resources for Arabidopsis functional genomics.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Extending the utility of gene profiling data by bridging microarray platforms.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Statistical significance for genomewide studies

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Reproducibility of gene expression across generations of Affymetrix microarrays

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Spotted long oligonucleotide arrays for human gene expression analysis.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

CATMA: a complete Arabidopsis GST database

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Transcriptional regulatory networks in Saccharomyces cerevisiae

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Meta-analysis of microarrays: interstudy validation of gene expression profiles reveals pathway dysregulation in prostate cancer.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

RNA amplification results in reproducible microarray data with slight ratio bias

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Analysis of matched mRNA measurements from two different microarray technologies

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Assessment of the relationship between signal intensities and transcript concentration for Affymetrix GeneChip arrays

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Development of a system for the inference of large scale genetic networks.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Genetic network inference: from co-expression clustering to reverse engineering

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

Functional discovery via a compendium of expression profiles

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1065359

25 August 2018

Identifiers

DOI

10.1104/PP.104.051300

1 reference

6 April 2018

0 references

1 reference

6 April 2018