(Q51890030)

17 April 2018

title

Protein association with circular DNA: rate enhancement by nonspecific binding. (English)

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17 April 2018

author

Huan-Xiang Zhou

series ordinal

2

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author name string

Ramzi Alsallaq

series ordinal

1

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17 April 2018

language of work or name

English

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publication date

1 March 2008

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Journal of Chemical Physics

published in

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17 April 2018

volume

128

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issue

11

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page(s)

115108

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

cites work

1 reference

How do site-specific DNA-binding proteins find their targets?

21 January 2018

1 reference

A model for the mediation of processivity of DNA-targeting proteins by nonspecific binding: dependence on DNA length and presence of obstacles

21 January 2018

1 reference

Association kinetics with coupled three- and one-dimensional diffusion. Chain-length dependence of the association rate of specific DNA sites.

21 January 2018

1 reference

Analysis of a one-dimensional random walk with irreversible losses at each step: applications for protein movement on DNA

21 January 2018

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Kinetics of target site localization of a protein on DNA: a stochastic approach.

21 January 2018

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Facilitated diffusion of the EcoRI DNA methyltransferase is described by a novel mechanism

21 January 2018

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Kinetic characterization of linear diffusion of the restriction endonuclease EcoRV on DNA.

21 January 2018

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Long-distance lateral diffusion of human Rad51 on double-stranded DNA.

21 January 2018

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Diffusion-controlled bimolecular reaction rates. The effect of rotational diffusion and orientation constraints

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21 January 2018

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Time dependent rate of diffusion-influenced ligand binding to receptors on cell surfaces

21 January 2018

1 reference

Energetic and structural considerations for the mechanism of protein sliding along DNA in the nonspecific BamHI-DNA complex.

21 January 2018

1 reference

Obstacle bypass in protein motion along DNA by two-dimensional rather than one-dimensional sliding

21 January 2018

1 reference

Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences

21 January 2018

1 reference

One- and three-dimensional pathways for proteins to reach specific DNA sites

21 January 2018

1 reference

How do biomolecular systems speed up and regulate rates?

21 January 2018

1 reference

Facilitated Diffusion of DNA-Binding Proteins

21 January 2018

1 reference

Enhancement of Association Rates by Nonspecific Binding to DNA and Cell Membranes

21 January 2018

1 reference

A Brownian dynamics algorithm for calculating the hydrodynamic friction and the electrostatic capacitance of an arbitrarily shaped object

21 January 2018

1 reference

On the calculation of diffusive reaction rates using Brownian dynamics simulations

21 January 2018

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Kinetics of diffusion-influenced reactions studied by Brownian dynamics

21 January 2018

1 reference

Theory and Simulation of the Influence of Diffusion in Enzyme-Catalyzed Reactions

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1063/1.2888996

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17 April 2018

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17 April 2018