(Q51961295)

19 April 2018

title

Ab initio construction of all-atom loop conformations. (English)

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19 April 2018

author name string

Haiyan Jiang

series ordinal

1

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19 April 2018

Christian Blouin

series ordinal

2

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19 April 2018

publication date

25 October 2005

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19 April 2018

Journal of Molecular Modeling

published in

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19 April 2018

volume

12

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19 April 2018

issue

2

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19 April 2018

page(s)

221-228

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19 April 2018

A hierarchical approach to all-atom protein loop prediction

cites work

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12 December 2020

Cyclic coordinate descent: A robotics algorithm for protein loop closure.

1 reference

12 December 2020

Ab initio modeling of small, medium, and large loops in proteins.

1 reference

12 December 2020

Conformational sampling using high-temperature molecular dynamics

1 reference

12 December 2020

Comparison of systematic search and database methods for constructing segments of protein structure

1 reference

12 December 2020

Predicting antibody hypervariable loop conformations. II: Minimization and molecular dynamics studies of MCPC603 from many randomly generated loop conformations

1 reference

12 December 2020

HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.

1 reference

12 December 2020

Influence of rotational energy barriers to the conformational search of protein loops in molecular dynamics and ranking the conformations.

1 reference

12 December 2020

A divide and conquer approach to fast loop modeling

1 reference

12 December 2020

A kinematic view of loop closure

1 reference

12 December 2020

New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification.

1 reference

12 December 2020

Ab initio construction of polypeptide fragments: Accuracy of loop decoy discrimination by an all-atom statistical potential and the AMBER force field with the Generalized Born solvation model

1 reference

12 December 2020

CODA: a combined algorithm for predicting the structurally variable regions of protein models.

1 reference

12 December 2020

Efficient methods for filtering and ranking fragments for the prediction of structurally variable regions in proteins

1 reference

12 December 2020

Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins

1 reference

12 December 2020

Modeling of loops in protein structures

1 reference

12 December 2020

Development of softcore potential functions for overcoming steric barriers in molecular dynamics simulations

1 reference

12 December 2020

PDB-based protein loop prediction: parameters for selection and methods for optimization.

1 reference

12 December 2020

An improved method for nonbonded list generation: rapid determination of near-neighbor pairs.

1 reference

12 December 2020

Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction

1 reference

12 December 2020

Ab initio construction of polypeptide fragments: efficient generation of accurate, representative ensembles.

1 reference

12 December 2020

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

12 December 2020

Protein folding by restrained energy minimization and molecular dynamics

1 reference

12 December 2020

Predicting antibody hypervariable loop conformation. I. Ensembles of random conformations for ringlike structures

1 reference

12 December 2020

An algorithm for determining the conformation of polypeptide segments in proteins by systematic search

1 reference

12 December 2020

Geometric algorithms for the conformational analysis of long protein loops

1 reference

12 December 2020

10.1007/S00894-005-0030-X

Identifiers

DOI

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19 April 2018

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19 April 2018