(Q51998853)

English

Distinct roles for the 5' and 3' untranslated regions in the degradation and accumulation of chloroplast tufA mRNA: identification of an early intermediate in the in vivo degradation pathway.

scientific article published on 17 December 2006

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/17180456

Distinct roles for the 5' and 3' untranslated regions in the degradation and accumulation of chloroplast tufA mRNA: identification of an early intermediate in the in vivo degradation pathway. (English)

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/17180456

author name string

Alicia A Zicker

1

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/17180456

Crystal S Kadakia

2

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/17180456

David L Herrin

3

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/17180456

publication date

17 December 2006

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/17180456

number of pages

14

1 reference

based on heuristic

inferred from page(s)

Plant Molecular Biology

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/17180456

63

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/17180456

5

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/17180456

689-702

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/17180456

Small cis-acting sequences that specify secondary structures in a chloroplast mRNA are essential for RNA stability and translation

1 reference

https://api.crossref.org/works/10.1007%2FS11103-006-9117-8

21 January 2018

Cell cycle-dependent transcriptional and post-transcriptional regulation of chloroplast gene expression in Chlamydomonas reinhardtii

1 reference

https://api.crossref.org/works/10.1007%2FS11103-006-9117-8

21 January 2018

3'-Processed mRNA is preferentially translated in Chlamydomonas reinhardtii chloroplasts

1 reference

https://api.crossref.org/works/10.1007%2FS11103-006-9117-8

21 January 2018

petD mRNA maturation in Chlamydomonas reinhardtii chloroplasts: role of 5' endonucleolytic processing

1 reference

https://api.crossref.org/works/10.1007%2FS11103-006-9117-8

21 January 2018

Light regulated translational activators: identification of chloroplast gene specific mRNA binding proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

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Detection of specific polymerase chain reaction product by utilizing the 5'----3' exonuclease activity of Thermus aquaticus DNA polymerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional in vivo analyses of the 3' flanking sequences of the Chlamydomonas chloroplast rbcL and psaB genes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Darkness and antibiotics increase the steady-state transcripts of the elongation factor gene (tuf) in Chlamydomonas reinhardtii

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Addition of destabilizing poly (A)-rich sequences to endonuclease cleavage sites during the degradation of chloroplast mRNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Specific roles of 5' RNA secondary structures in stabilizing transcripts in chloroplasts

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A 3' stem/loop structure of the Chlamydomonas chloroplast atpB gene regulates mRNA accumulation in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of cis-acting RNA leader elements required for chloroplast psbD gene expression in Chlamydomonas

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

5' sequences are important positive and negative determinants of the longevity of Chlamydomonas chloroplast gene transcripts

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Processing of a composite large subunit rRNA. Studies with chlamydomonas mutants deficient in maturation of the 23s-like rrna

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Renilla luciferase as a vital reporter for chloroplast gene expression in Chlamydomonas.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutations that alter the higher-order structure of its 5' untranslated region affect the stability of chloroplast rps7 mRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Purification of chloroplast elongation factor Tu and cDNA analysis in tobacco: the existence of two chloroplast elongation factor Tu species

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid, reversible staining of northern blots prior to hybridization

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contribution of 5'- and 3'-untranslated regions of plastid mRNAs to the expression of Chlamydomonas reinhardtii chloroplast genes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Messenger RNA stability and its role in control of gene expression in bacteria and phages

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assessing the relative importance of light and the circadian clock in controlling chloroplast translation in Chlamydomonas reinhardtii

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational regulation of chloroplast genes. Proteins binding to the 5'-untranslated regions of chloroplast mRNAs in Chlamydomonas reinhardtii

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The sequence and secondary structure of the 3'-UTR affect 3'-end maturation, RNA accumulation, and translation in tobacco chloroplasts

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polypeptide Chain Initiation: Nucleotide Sequences of the Three Ribosomal Binding Sites in Bacteriophage R17 RNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The enzymes and control of eukaryotic mRNA turnover

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The 3'-untranslated region of chloroplast psbA mRNA stabilizes binding of regulatory proteins to the leader of the message

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

5' to 3' exoribonucleolytic activity is a normal component of chloroplast mRNA decay pathways

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stress induction and developmental regulation of a rice chitinase promoter in transgenic tobacco

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stability determinants in the chloroplast psbB/T/H mRNAs of Chlamydomonas reinhardtii

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Short dispersed repeats in the Chlamydomonas chloroplast genome are collocated with sites for mRNA 3' end formation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A dominant nuclear mutation in Chlamydomonas identifies a factor controlling chloroplast mRNA stability by acting on the coding region of the atpA transcript

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A tale of two termini: a functional interaction between the termini of an mRNA is a prerequisite for efficient translation initiation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosomal RNA processing and an RNase R family member in chloroplasts of Arabidopsis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Requirement for cytoplasmic protein synthesis during circadian peaks of transcription of chloroplast-encoded genes in Chlamydomonas

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Function of 3' non-coding sequences and stop codon usage in expression of the chloroplast psaB gene in Chlamydomonas reinhardtii

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synthesis of EF-Tu and distribution of its mRNA between stroma and thylakoids during the cell cycle of Chlamydomonas reinhardii

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The sequence and structure of the 3'-untranslated regions of chloroplast transcripts are important determinants of mRNA accumulation and stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Nac2 gene of Chlamydomonas encodes a chloroplast TPR-like protein involved in psbD mRNA stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polyadenylation accelerates degradation of chloroplast mRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chloroplast transformation in Chlamydomonas

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cooperation of endo- and exoribonucleases in chloroplast mRNA turnover

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The 54 kDa RNA-binding protein from mustard chloroplasts mediates endonucleolytic transcript 3' end formation in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vivo analysis of plastid psbA, rbcL and rpl32 UTR elements by chloroplast transformation: tobacco plastid gene expression is controlled by modulation of transcript levels and translation efficiency

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosomes pause at specific sites during synthesis of membrane-bound chloroplast reaction center protein D1

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chloroplast RNA-binding proteins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription of tufA and other chloroplast-encoded genes is controlled by a circadian clock in Chlamydomonas

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determinants for stability of the chloroplast psbD RNA are located within its short leader region in Chlamydomonas reinhardtii

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An mRNA 3' processing site targets downstream sequences for rapid degradation in Chlamydomonas chloroplasts

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosome pausing and stacking during translation of a eukaryotic mRNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chloroplast ribosome biogenesis in Chlamydomonas. Selection and characterization of mutants blocked in ribosome formation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Searching limiting steps in the expression of chloroplast-encoded proteins: relations between gene copy number, transcription, transcript abundance and translation rate in the chloroplast of Chlamydomonas reinhardtii.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulatory sequences of orthologous petD chloroplast mRNAs are highly specific among Chlamydomonas species.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary transfer of the chloroplast tufA gene to the nucleus.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vivo evidence for 5'-->3' exoribonuclease degradation of an unstable chloroplast mRNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosomes pause during the expression of the large ATP synthase gene cluster in spinach chloroplasts

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Chlamydomonas Sourcebook. A Comprehensive Guide to Biology and Laboratory Use. Elizabeth H. Harris. Academic Press, San Diego, CA, 1989. xiv, 780 pp., illus. $145

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosomes bound to chloroplast membranes in Chlamydomonas reinhardtii

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coordination of nuclear and chloroplast gene expression in plant cells.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chaperone activity of recombinant maize chloroplast protein synthesis elongation factor, EF-Tu.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Posttranscriptional accumulation of chloroplast tufA (elongation factor gene) mRNA during chloroplast development in Chlamydomonas reinhardtii

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the translational initiation region on the Euglena gracilis chloroplast ribulose-bisphosphate carboxylase/oxygenase (rbcL) messenger RNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of Mbb1, a nucleus-encoded tetratricopeptide-like repeat protein required for expression of the chloroplast psbB/psbT/psbH gene cluster in Chlamydomonas reinhardtii

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transgenic expression of aminoglycoside adenine transferase in the chloroplast: a selectable marker of site-directed transformation of chlamydomonas

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Light-regulated and endogenous fluctuations of chloroplast transcript levels in Chlamydomonas. Regulation by transcription and RNA degradation

1 reference

https://pubmed.ncbi.nlm.nih.gov/17180456

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S11103-006-9117-8

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/17180456

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

19 April 2018

http://europepmc.org/abstract/MED/17180456

ResearchGate publication ID

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