(Q52029038)

20 April 2018

title

Probabilistic code for DNA recognition by proteins of the EGR family. (English)

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20 April 2018

author

Panayiotis V Benos

series ordinal

1

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20 April 2018

author name string

Alan S Lapedes

series ordinal

2

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20 April 2018

Gary D Stormo

series ordinal

3

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20 April 2018

language of work or name

English

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publication date

1 November 2002

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20 April 2018

Journal of Molecular Biology

published in

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20 April 2018

volume

323

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20 April 2018

issue

4

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20 April 2018

page(s)

701-727

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20 April 2018

Sequence-specific recognition of double helical nucleic acids by proteins

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

7 January 2021

Protein-DNA recognition

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Protein-DNA interaction. No code for recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Base sequence discrimination by zinc-finger DNA-binding domains.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Toward rules relating zinc finger protein sequences and DNA binding site preferences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

A zinc finger directory for high-affinity DNA recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Quantitative parameters for amino acid-base interaction: implications for prediction of protein-DNA binding sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

DNA recognition by Cys2His2 zinc finger proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

DNA recognition code of transcription factors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Physical basis of a protein-DNA recognition code

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Non-independence of Mnt repressor-operator interaction determined by a new quantitative multiple fluorescence relative affinity (QuMFRA) assay.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Additivity in protein-DNA interactions: how good an approximation is it?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

A nerve growth factor-induced gene encodes a possible transcriptional regulatory factor.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

A zinc finger-encoding gene coregulated with c-fos during growth and differentiation, and after cellular depolarization

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

A gene coding for a zinc finger protein is induced during 12-O-tetradecanoylphorbol-13-acetate-stimulated HL-60 cell differentiation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

The structure and expression of the Xenopus Krox-20 gene: conserved and divergent patterns of expression in rhombomeres and neural crest.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

The zebrafish egr1 gene encodes a highly conserved, zinc-finger transcriptional regulator

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

The Pfam protein families database.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

High-resolution structures of variant Zif268-DNA complexes: implications for understanding zinc finger-DNA recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Selection of DNA binding sites for zinc fingers using rationally randomized DNA reveals coded interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

DNA binding sites: representation and discovery

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Egr-1 activates basic fibroblast growth factor transcription. Mechanistic implications for astrocyte proliferation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

A regulatory element in the human interleukin 2 gene promoter is a binding site for the zinc finger proteins Sp1 and EGR-1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Two monomers of yeast transcription factor ADR1 bind a palindromic sequence symmetrically to activate ADH2 expression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Information content of binding sites on nucleotide sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

An accessory DNA binding motif in the zinc finger protein Adr1 assists stable binding to DNA and can be replaced by a third finger

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Comparison of the DNA binding characteristics of the related zinc finger proteins WT1 and EGR1

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Exploring the DNA-binding specificities of zinc fingers with DNA microarrays

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

DNA recognition code of transcription factors in the helix-turn-helix, probe helix, hormone receptor, and zinc finger families

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Structure-based design of transcription factors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Comprehensive analysis of hydrogen bonds in regulatory protein DNA-complexes: in search of common principles

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2802%2900917-8

10.1016/S0022-2836(02)00917-8

7 January 2021

Identifiers

DOI

1 reference

20 April 2018

1 reference

20 April 2018