(Q52080522)

21 April 2018

title

Side-chain flexibility in proteins upon ligand binding. (English)

1 reference

21 April 2018

1 reference

Rafael J. Najmanovich

1

1 reference

21 April 2018

author name string

Kuttner J

2

1 reference

21 April 2018

Sobolev V

3

1 reference

21 April 2018

Edelman M

4

1 reference

21 April 2018

language of work or name

English

0 references

publication date

1 May 2000

1 reference

21 April 2018

published in

Proteins

1 reference

21 April 2018

volume

39

1 reference

21 April 2018

page(s)

261-268

1 reference

21 April 2018

issue

3

1 reference

21 April 2018

The Protein Data Bank: a computer-based archival file for macromolecular structures

cites work

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

A geometric approach to macromolecule-ligand interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

The computer program LUDI: a new method for the de novo design of enzyme inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Molecular docking using surface complementarity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Flexible ligand docking using a genetic algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

A fast flexible docking method using an incremental construction algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Ligand docking to proteins with discrete side-chain flexibility.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Molecular recognition of receptor sites using a genetic algorithm with a description of desolvation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Molecular docking to ensembles of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Docking of flexible ligands to flexible receptors in solution by molecular dynamics simulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Three-dimensional structure of a recombinant variant of human pancreatic secretory trypsin inhibitor (Kazal type)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Solution structure of a calmodulin-target peptide complex by multidimensional NMR

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Structure of ricin A-chain at 2.5 A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Crystal structure of recombinant murine adipocyte lipid-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Accuracy of side-chain prediction upon near-native protein backbones generated by Ab initio folding methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Efficient rotamer elimination applied to protein side-chains and related spin glasses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

All in one: a highly detailed rotamer library improves both accuracy and speed in the modelling of sidechains by dead-end elimination

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Enhanced dead-end elimination in the search for the global minimum energy conformation of a collection of protein side chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

The fuzzy-end elimination theorem: correctly implementing the side chain placement algorithm based on the dead-end elimination theorem

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Finding the global minimum: a fuzzy end elimination implementation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Automated analysis of interatomic contacts in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Modeling the quinone-B binding site of the photosystem-II reaction center using notions of complementarity and contact-surface between atoms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

An analysis of conformational changes on protein-protein association: implications for predictive docking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

AAindex: amino acid index database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Conformation of amino acid side-chains in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

Elbow motion in the immunoglobulins involves a molecular ball-and-socket joint

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

The dead-end elimination theorem and its use in protein side-chain positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F%28SICI%291097-0134%2820000515%2939%3A3%3C261%3A%3AAID-PROT90%3E3.0.CO%3B2-4

10.1002/(SICI)1097-0134(20000515)39:3<261::AID-PROT90>3.0.CO;2-4

21 January 2018

Identifiers

DOI

1 reference

21 April 2018

PubMed ID

10737948

1 reference

21 April 2018