(Q52518587)

2 May 2018

title

Conformation of the circular dumbbell d<pCGC-TT-GCG-TT>: structure determination and molecular dynamics. (English)

1 reference

2 May 2018

author

Aldo Galeone

3

1 reference

2 May 2018

author name string

J H Ippel

1

1 reference

2 May 2018

V Lanzotti

2

1 reference

2 May 2018

L Mayol

4

1 reference

2 May 2018

J E van den Boogaart

5

1 reference

2 May 2018

J A Pikkemaat

6

1 reference

2 May 2018

C Altona

7

1 reference

2 May 2018

publication date

1 December 1995

1 reference

2 May 2018

Journal of Biomolecular NMR

published in

1 reference

2 May 2018

volume

6

1 reference

2 May 2018

issue

4

1 reference

2 May 2018

page(s)

403-422

1 reference

2 May 2018

https://scigraph.springernature.com/pub.10.1007/bf00197639

exact match

0 references

cites work

Effect of distortions in the deoxyribose phosphate backbone conformation of duplex oligodeoxyribonucleotide dodecamers containing GT, GG, GA, AC, and GU base-pair mismatches on 31P NMR spectra

1 reference

12 December 2020

An NMR study of the conformation and thermodynamics of the circular dumbbell d [formula: see text] Slow exchange between two- and four-membered hairpin loops.

1 reference

12 December 2020

The three-dimensional structure of a DNA hairpin in solution two-dimensional NMR studies and structural analysis of d(ATCCTATTTATAGGAT).

1 reference

12 December 2020

NMR studies of the exocyclic 1,N6-ethenodeoxyadenosine adduct (epsilon dA) opposite deoxyguanosine in a DNA duplex. Epsilon dA(syn).dG(anti) pairing at the lesion site

1 reference

12 December 2020

A protein structure from nuclear magnetic resonance data. lac repressor headpiece

1 reference

12 December 2020

Slow conformational exchange in DNA minihairpin loops: a conformational study of the circular dumbbell d<pCGC-TT-GCG-TT>.

1 reference

12 December 2020

Structure determination of a DNA octamer in solution by NMR spectroscopy. Effect of fast local motions

1 reference

12 December 2020

Carbon-13 NMR in conformational analysis of nucleic acid fragments. 2. A reparametrization of the Karplus equation for vicinal NMR coupling constants in CCOP and HCOP fragments.

1 reference

12 December 2020

Unstable Hoogsteen base pairs adjacent to echinomycin binding sites within a DNA duplex

1 reference

12 December 2020

Hairpin structures in DNA containing arabinofuranosylcytosine. A combination of nuclear magnetic resonance and molecular dynamics

1 reference

12 December 2020

Proton NMR study of the [d(ACGTATACGT)]2-2echinomycin complex: conformational changes between echinomycin binding sites

1 reference

12 December 2020

An NMR study of the polymorphous behavior of the mismatched DNA octamer d(m5C-G-m5C-G-T-G-m5C-G) in solution. The B, Z, and hairpin forms

1 reference

12 December 2020

Studies on the structure and stabilizing factor of the CUUCGG hairpin RNA using chemically synthesized oligonucleotides

1 reference

12 December 2020

Heteronuclear NMR of DNA with the heteronucleus in natural abundance: facilitated assignment and extraction of coupling constants

1 reference

12 December 2020

Two-dimensional 1H and 31P NMR spectra and restrained molecular dynamics structure of an oligodeoxyribonucleotide duplex refined via a hybrid relaxation matrix procedure

1 reference

12 December 2020

Determining local conformational variations in DNA. Nuclear magnetic resonance structures of the DNA duplexes d(CGCCTAATCG) and d(CGTCACGCGC) generated using back-calculation of the nuclear Overhauser effect spectra, a distance geometry algorithm an

1 reference

12 December 2020

1H NMR of 5'CGCGTATATACGCG3', a duplex and a four-membered loop

1 reference

12 December 2020

A hypothesis on a specific sequence-dependent conformation of DNA and its relation to the binding of the lac-repressor protein

1 reference

12 December 2020

Time-averaged nuclear Overhauser effect distance restraints applied to tendamistat

1 reference

12 December 2020

Hairpin and duplex formation of the DNA octamer d(m5C-G-m5C-G-T-G-m5C-G) in solution. An NMR study

1 reference

12 December 2020

Solution structure of a DNA octamer containing the Pribnow box via restrained molecular dynamics simulation with distance and torsion angle constraints derived from two-dimensional nuclear magnetic resonance spectral fitting

1 reference

12 December 2020

Solution conformation of a deoxynucleotide containing tandem G.A mismatched base pairs and 3'-overhanging ends in d(GTGAACTT)2

1 reference

12 December 2020

Local variability and base sequence effects in DNA crystal structures.

1 reference

12 December 2020

The electrostatic contribution to DNA base-stacking interactions.

1 reference

12 December 2020

Molecular dynamics simulations of d(C-G-C-G-A) X d(T-C-G-C-G) with and without "hydrated" counterions

1 reference

12 December 2020

Stacking energies in DNA.

1 reference

12 December 2020

Thermodynamics of melting of the circular dumbbell d<pCGC-TT-GCG-TT>.

1 reference

12 December 2020

Alternative structures for alternating poly(dA-dT) tracts: the structure of the B-DNA decamer C-G-A-T-A-T-A-T-C-G

1 reference

12 December 2020

Solution conformations of d(CGTACG)2 determined from NMR experiments

1 reference

12 December 2020

Application of phase sensitive two-dimensional correlated spectroscopy (COSY) for measurements of 1H-1H spin-spin coupling constants in proteins

1 reference

12 December 2020

Carbon-13 NMR in conformational analysis of nucleic acid fragments. 4. The torsion angle distribution about the C3'-O3' bond in DNA constituents

1 reference

12 December 2020

NMR studies of bipyrimidine cyclobutane photodimers

1 reference

12 December 2020

Structural features of an RNA containing the CUGGGA loop of the human immunodeficiency virus type 1 trans-activation response element

1 reference

12 December 2020

Determination of the preferred conformations constrained along the C-4'-C-5' and C-5'-0-5' bonds of .beta.-5'-nucleotides in solution. Four-bond phosphorus-31-proton coupling

1 reference

12 December 2020

Furanose sugar conformations in DNA from NMR coupling constants

1 reference

12 December 2020

Two-base DNA hairpin-loop structures in vivo

1 reference

12 December 2020

Solution conformation of a heptadecapeptide comprising the DNA binding helix F of the cyclic AMP receptor protein of Escherichia coli. Combined use of 1H nuclear magnetic resonance and restrained molecular dynamics.

1 reference

12 December 2020

Conformational and model-building studies of the hairpin form of the mismatched DNA octamer d(m5C-G-m5C-G-T-G-m5C-G)

1 reference

12 December 2020

IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN). Abbreviations and symbols for the description of conformations of polynucleotide chains. Recommendations 1982

1 reference

12 December 2020

Are time-averaged restraints necessary for nuclear magnetic resonance refinement? A model study for DNA.

1 reference

12 December 2020

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

1 reference

12 December 2020

Determination of the backbone torsion angle epsilon in nucleic acids

1 reference

12 December 2020

Multinuclear NMR studies of DNA hairpins. 1. Structure and dynamics of d(CGCGTTGTTCGCG).

1 reference

12 December 2020

Solution structure of an unusually stable RNA hairpin, 5GGAC(UUCG)GUCC

1 reference

12 December 2020

Structure of an unusually stable RNA hairpin

1 reference

12 December 2020

Conformational properties of the G.G mismatch in d(CGCGAATTGGCG)2 determined by NMR

1 reference

12 December 2020

Multinuclear NMR studies of DNA hairpins. 2. Sequence-dependent structural variations

1 reference

12 December 2020

Conformational Analysis of N6-Methyladenylyl-Uridine

1 reference

12 December 2020

Identifiers

DOI

10.1007/BF00197639

1 reference

2 May 2018

1 reference

2 May 2018