(Q52568862)

3 May 2018

title

Active PHO5 chromatin encompasses variable numbers of nucleosomes at individual promoters. (English)

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3 May 2018

author name string

Walter J Jessen

1

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3 May 2018

Scott A Hoose

2

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3 May 2018

Jessica A Kilgore

3

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3 May 2018

Michael P Kladde

4

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3 May 2018

publication date

19 February 2006

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3 May 2018

Nature Structural & Molecular Biology

published in

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3 May 2018

volume

13

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3 May 2018

page(s)

256-263

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3 May 2018

issue

3

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3 May 2018

https://scigraph.springernature.com/pub.10.1038/nsmb1062

exact match

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cites work

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Chromatin remodeling enzymes: who's on first?

21 January 2018

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Cooperation between complexes that regulate chromatin structure and transcription

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Histone acetyltransferase activity of yeast Gcn5p is required for the activation of target genes in vivo

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Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter

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Modifying gene expression programs by altering core promoter chromatin architecture.

21 January 2018

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The two positively acting regulatory proteins PHO2 and PHO4 physically interact with PHO5 upstream activation regions

21 January 2018

1 reference

Phosphorylation of the transcription factor PHO4 by a cyclin-CDK complex, PHO80-PHO85.

21 January 2018

1 reference

Regulation of PHO4 nuclear localization by the PHO80-PHO85 cyclin-CDK complex.

21 January 2018

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Phosphorylation regulates association of the transcription factor Pho4 with its import receptor Pse1/Kap121.

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The receptor Msn5 exports the phosphorylated transcription factor Pho4 out of the nucleus

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Roles of phosphorylation sites in regulating activity of the transcription factor Pho4.

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Phosphate-regulated inactivation of the kinase PHO80-PHO85 by the CDK inhibitor PHO81.

21 January 2018

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Regulation of chromatin remodeling by inositol polyphosphates

21 January 2018

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Multiple Mechanistically Distinct Functions of SAGA at the PHO5 Promoter

21 January 2018

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Promoter occupancy is a major determinant of chromatin remodeling enzyme requirements

21 January 2018

1 reference

Transcription factors vs nucleosomes: regulation of the PHO5 promoter in yeast

21 January 2018

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Nucleosomes unfold completely at a transcriptionally active promoter.

21 January 2018

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Histones are first hyperacetylated and then lose contact with the activated PHO5 promoter.

21 January 2018

1 reference

Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes.

21 January 2018

1 reference

Removal of promoter nucleosomes by disassembly rather than sliding in vivo.

21 January 2018

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Recruitment of the NuA4 complex poises the PHO5 promoter for chromatin remodeling and activation

21 January 2018

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Absence of Gcn5 HAT activity defines a novel state in the opening of chromatin at the PHO5 promoter in yeast.

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Mapping chromatin structure in vivo using DNA methyltransferases.

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In vivo methods to analyze chromatin structure

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Positioned nucleosomes inhibit Dam methylation in vivo

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Cell type-specific chromatin organization of the region that governs directionality of yeast mating type switching

21 January 2018

1 reference

Functional domains of a positive regulatory protein, PHO4, for transcriptional control of the phosphatase regulon in Saccharomyces cerevisiae

21 January 2018

1 reference

The homeodomain protein Pho2 and the basic-helix-loop-helix protein Pho4 bind DNA cooperatively at the yeast PHO5 promoter

21 January 2018

1 reference

Requirements for chromatin modulation and transcription activation by the Pho4 acidic activation domain

21 January 2018

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5-Methylcytosine is not detectable in Saccharomyces cerevisiae DNA

21 January 2018

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A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands

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High sensitivity mapping of methylated cytosines

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Cloning, characterization and expression of the gene coding for a cytosine-5-DNA methyltransferase recognizing GpC.

21 January 2018

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Histone acetyltransferase complexes stabilize swi/snf binding to promoter nucleosomes.

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Rapid detection of functional expression of C-5-DNA methyltransferases in yeast

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Control of stochasticity in eukaryotic gene expression

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Binding of Gal4p and bicoid to nucleosomal sites in yeast in the absence of replication

21 January 2018

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Yeast vectors for integration at the HO locus

21 January 2018

1 reference

Polyphosphate Loss Promotes SNF/SWI- and Gcn5-Dependent Mitotic Induction of PHO5

21 January 2018

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Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements.

21 January 2018

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Direct study of DNA-protein interactions in repressed and active chromatin in living cells.

31 March 2020

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Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation

31 March 2020

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Sequence and position-dependence of the equilibrium accessibility of nucleosomal DNA target sites

31 March 2020

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The transcription factor, the Cdk, its cyclin and their regulator: directing the transcriptional response to a nutritional signal.

31 March 2020

1 reference

Role of trans-activating proteins in the generation of active chromatin at the PHO5 promoter in S. cerevisiae.

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NSMB1062

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3 May 2018

Dimensions Publication ID

1002882105

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Fatcat ID

release_vcflfcn6zzf3ries46txkfisgu

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/vcflfcn6zzf3ries46txkfisgu

mapped directly with Wikidata item

24 November 2022

based on heuristic

PubMed ID

16491089

1 reference

3 May 2018