(Q52579423)

http://europepmc.org/abstract/MED/29670290

3 May 2018

title

Renewing Felsenstein's phylogenetic bootstrap in the era of big data. (English)

1 reference

http://europepmc.org/abstract/MED/29670290

3 May 2018

1 reference

1 reference

Jean-Baka Domelevo Entfellner

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

author name string

F Lemoine

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

E Wilkinson

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

D Correia

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

M Dávila Felipe

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

T De Oliveira

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

O Gascuel

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

language of work or name

English

0 references

publication date

18 April 2018

1 reference

http://europepmc.org/abstract/MED/29670290

3 May 2018

published in

Nature

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

volume

556

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

issue

7702

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

page(s)

452-456

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/s41586-018-0043-0

10 June 2020

exact match

0 references

cites work

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

SMS: Smart Model Selection in PhyML.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Nextflow enables reproducible computational workflows.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Maximum Likelihood Phylogenetic Inference is Consistent on Multiple Sequence Alignments, with or without Gaps

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

tqDist: a library for computing the quartet and triplet distances between binary or general trees.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Ultrafast approximation for phylogenetic bootstrap

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Pruning rogue taxa improves phylogenetic accuracy: an efficient algorithm and webservice

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Phylodynamics of HIV-1 subtype C epidemic in east Africa

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

The origin and diversity of the HIV-1 pandemic

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

A metric for phylogenetic trees based on matching.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Statistics and truth in phylogenomics

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Sparse supermatrices for phylogenetic inference: taxonomy, alignment, rogue taxa, and the phylogeny of living turtles

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Bootstrap support is not first-order correct.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

FastTree 2--approximately maximum-likelihood trees for large alignments

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

First-order correct bootstrap support adjustments for splits that allow hypothesis testing when using maximum likelihood estimation.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

jpHMM: improving the reliability of recombination prediction in HIV-1.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

INDELible: a flexible simulator of biological sequence evolution

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

A rapid bootstrap algorithm for the RAxML Web servers

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Using repeated measurements to validate hierarchical gene clusters.

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Identification of subtype C human immunodeficiency virus type 1 by subtype-specific PCR and its use in the characterization of viruses circulating in the southern parts of India

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Unifying the epidemiological and evolutionary dynamics of pathogens

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

A specific subtype C of human immunodeficiency virus type 1 circulates in Brazil

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Majority-rule reduced consensus trees and their use in bootstrapping

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Bootstrap confidence levels for phylogenetic trees

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Estimation of confidence in phylogeny: the complete-and-partial bootstrap technique

2 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6030568

Bootstrap Methods: Another Look at the Jackknife

2 November 2018

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0043-0

7 January 2021

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0043-0

7 January 2021

Bootstrapping Phylogenetic Trees: Theory and Methods

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0043-0

7 January 2021

An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0043-0

7 January 2021

Testing the phylogenetic stability of early tetrapods

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0043-0

7 January 2021

The Jackknife and the Bootstrap for General Stationary Observations

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0043-0

7 January 2021

Geometry of the Space of Phylogenetic Trees

1 reference

https://api.crossref.org/works/10.1038%2FS41586-018-0043-0

7 January 2021

10.1038/S41586-018-0043-0

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

journals/nature/LemoineEWCFOG18

10 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29670290%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

1 reference