(Q52630783)

4 May 2018

title

Satellite DNA evolution: old ideas, new approaches. (English)

1 reference

4 May 2018

author name string

Sarah Sander Lower

1

1 reference

4 May 2018

Michael P McGurk

2

1 reference

4 May 2018

Andrew G Clark

3

1 reference

4 May 2018

Daniel A Barbash

4

1 reference

4 May 2018

publication date

23 March 2018

1 reference

4 May 2018

Current Opinion in Genetics & Development

published in

1 reference

4 May 2018

volume

49

1 reference

4 May 2018

page(s)

70-78

1 reference

4 May 2018

A Glimpse into the Satellite DNA Library in Characidae Fish (Teleostei, Characiformes).

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Selection Constrains High Rates of Tandem Repetitive DNA Mutation in Daphnia pulex

25 August 2018

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Expanded Satellite Repeats Amplify a Discrete CENP-A Nucleosome Assembly Site on Chromosomes that Drive in Female Meiosis.

25 August 2018

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High-throughput analysis of the satellitome revealed enormous diversity of satellite DNAs in the neo-Y chromosome of the cricket Eneoptera surinamensis.

25 August 2018

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Dissecting the Satellite DNA Landscape in Three Cactophilic Drosophila Sequenced Genomes.

25 August 2018

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Stable centromere positioning in diverse sequence contexts of complex and satellite centromeres of maize and wild relatives.

25 August 2018

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Genome Size in North American Fireflies: Substantial Variation Likely Driven by Neutral Processes

25 August 2018

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Satellite Repeats Identify X Chromatin for Dosage Compensation in Drosophila melanogaster Males.

25 August 2018

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TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.

25 August 2018

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Single-molecule sequencing resolves the detailed structure of complex satellite DNA loci in Drosophila melanogaster

25 August 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications.

25 August 2018

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Centromere location in Arabidopsis is unaltered by extreme divergence in CENH3 protein sequence

25 August 2018

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Satellite DNA Sequences in Canidae and Their Chromosome Distribution in Dog and Red Fox.

25 August 2018

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Satellite DNA and Transposable Elements in Seabuckthorn (Hippophae rhamnoides), a Dioecious Plant with Small Y and Large X Chromosomes

25 August 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Comparative Analysis of Satellite DNA in the Drosophila melanogaster Species Complex

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Diversity and distribution of alpha satellite DNA in the genome of an Old World monkey: Cercopithecus solatus

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Genomic variation within alpha satellite DNA influences centromere location on human chromosomes with metastable epialleles

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Regular higher order repeat structures in beetle Tribolium castaneum genome

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

The Genetic Basis of Natural Variation in Caenorhabditis elegans Telomere Length.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

High-throughput analysis of the satellitome illuminates satellite DNA evolution

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

The major horse satellite DNA family is associated with centromere competence

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Pericentromeric satellite repeat expansions through RNA-derived DNA intermediates in cancer

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5M(g) of Aegilops geniculata

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Hybrid de novo tandem repeat detection using short and long reads.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Satellite DNA Modulates Gene Expression in the Beetle Tribolium castaneum after Heat Stress.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

An unusual mitochondrial genome structure of the tonguefish, Cynoglossus trigrammus: Control region translocation and a long additional non-coding region inversion

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Aging stem cells. A Werner syndrome stem cell model unveils heterochromatin alterations as a driver of human aging

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

A step to the gigantic genome of the desert locust: chromosome sizes and repeated DNAs.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Genomic characterization of large heterochromatic gaps in the human genome assembly.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Centromere reference models for human chromosomes X and Y satellite arrays.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Distinct chromatin features characterize different classes of repeat sequences in Drosophila melanogaster

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Direct mapping of symbolic DNA sequence into frequency domain in global repeat map algorithm

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Summarizing and correcting the GC content bias in high-throughput sequencing

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Repetitive DNA and next-generation sequencing: computational challenges and solutions

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Epigenetic effects of polymorphic Y chromosomes modulate chromatin components, immune response, and sexual conflict

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Genome-wide analysis of tandem repeats in Daphnia pulex--a comparative approach

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Species-specific heterochromatin prevents mitotic chromosome segregation to cause hybrid lethality in Drosophila

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Specific loss of histone H3 lysine 9 trimethylation and HP1gamma/cohesin binding at D4Z4 repeats is associated with facioscapulohumeral dystrophy (FSHD).

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Satellite DNAs between selfishness and functionality: structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

High-resolution profiling of histone methylations in the human genome

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Spectral Repeat Finder (SRF): identification of repetitive sequences using Fourier transformation.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Equilibrium sedimentation in density gradients of DNA preparations from animal tissues.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Variation in satellite DNA profiles--causes and effects

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Centromeres: selfish drivers.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Tandem repeats finder: a program to analyze DNA sequences

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Molecular drive: a cohesive mode of species evolution

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

25 August 2018

Origin of Satellite DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

The evolution of restricted recombination and the accumulation of repeated DNA sequences

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Persistence of tandem arrays: implications for satellite and simple-sequence DNAs.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Evolution of alpha-satellite DNA on human acrocentric chromosomes.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Ribosomal DNA and Stellate gene copy number variation on the Y chromosome of Drosophila melanogaster

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Functional Aspects of Satellite DNA and Heterochromatin

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5975084

Nucleotide sequences of HS-α satellite DNA from kangaroo rat dipodomys ordii and characterization of similar sequences in other rodents

25 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29579574

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Quantitative variation and chromosomal location of satellite DNAs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29579574

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The evolutionary dynamics of repetitive DNA in eukaryotes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29579574

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.GDE.2018.03.003

1 reference

4 May 2018

PMC publication ID

5975084

0 references

1 reference

4 May 2018