(Q54617896)

1 June 2018

title

Comparison of different footprinting methodologies for detecting binding sites for a small ligand on DNA. (English)

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1 June 2018

author name string

Bailly C

series ordinal

1

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1 June 2018

Waring MJ

series ordinal

2

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1 June 2018

publication date

1 February 1995

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1 June 2018

Journal of Biomolecular Structure and Dynamics

published in

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1 June 2018

volume

12

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1 June 2018

issue

4

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1 June 2018

page(s)

869-898

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1 June 2018

DNAase footprinting a simple method for the detection of protein-DNA binding specificity

cites work

1 reference

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"Footprint" titrations yield valid thermodynamic isotherms

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Sequence specificity of actinomycin D and Netropsin binding to pBR322 DNA analyzed by protection from DNase I

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Structural junctions in DNA: the influence of flanking sequence on nuclease digestion specificities

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Map of distamycin, netropsin, and actinomycin binding sites on heterogeneous DNA: DNA cleavage-inhibition patterns with methidiumpropyl-EDTA.Fe(II)

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Chemical nucleases: new reagents in molecular biology

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Photofootprinting of drug-binding sites on DNA using diazo- and azido-9-aminoacridine derivatives

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Uranyl mediated photofootprinting reveals strong E. coli RNA polymerase--DNA backbone contacts in the +10 region of the DeoP1 promoter open complex.

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High resolution footprinting of EcoRI and distamycin with Rh(phi)2(bpy)3+, a new photofootprinting reagent

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"Ultraviolet footprinting" accurately maps sequence-specific contacts and DNA kinking in the EcoRI endonuclease-DNA complex

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Genomic footprinting in mammalian cells with ultraviolet light

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Chemical probes of DNA conformation: detection of Z-DNA at nucleotide resolution.

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Methidiumpropyl-EDTA-Fe(II) and DNase I footprinting report different small molecule binding site sizes on DNA

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Sequence-specific binding of echinomycin to DNA: evidence for conformational changes affecting flanking sequences

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DNA structural variations produced by actinomycin and distamycin as revealed by DNAase I footprinting.

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Nuclease activity of 1,10-phenanthroline-copper ion. Conformational analysis and footprinting of the lac operon.

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Localized chemical reactivity in DNA associated with the sequence-specific bisintercalation of echinomycin

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The 2-amino group of guanine is absolutely required for specific binding of the anti-cancer antibiotic echinomycin to DNA

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Uranyl salts as photochemical agents for cleavage of DNA and probing of protein-DNA contacts

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DNA conformational analysis in solution by uranyl mediated photocleavage

21 January 2018

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21 January 2018

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Antitumour drug-DNA interactions: NMR studies of echinomycin and chromomycin complexes

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A new approach to the analysis of DNase I footprinting data and its application to the TFIIIA/5S DNA complex.

21 January 2018

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Molecular recognition of B-DNA by Hoechst 33258.

21 January 2018

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DNA sequence specificity of the pyrrolo[1,4]benzodiazepine antitumor antibiotics. Methidiumpropyl-EDTA-iron(II) footprinting analysis of DNA binding sites for anthramycin and related drugs.

21 January 2018

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Nuclease activity of 1,10-phenanthroline-copper ion: reaction with CGCGAATTCGCG and its complexes with netropsin and EcoRI.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1995.10508782

Nuclease activity of 1,10-phenanthroline-copper. New conjugates with low molecular weight targeting ligands

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1995.10508782

The DNA sequence at echinomycin binding sites determines the structural changes induced by drug binding: NMR studies of echinomycin binding to [d(ACGTACGT)]2 and [d(TCGATCGA)]2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1995.10508782

DNA footprinting with hydroxyl radical

21 January 2018

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https://api.crossref.org/works/10.1080%2F07391102.1995.10508782

Structure of DNase I at 2.0 Å resolution suggests a mechanism for binding to and cutting DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.1995.10508782

10.1080/07391102.1995.10508782

21 January 2018

Identifiers

DOI

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1 June 2018

PubMed ID

7779305

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1 June 2018