(Q55209661)

26 June 2018

title

Computational study of the force dependence of phosphoryl transfer during DNA synthesis by a high fidelity polymerase. (English)

1 reference

26 June 2018

main subject

computational biology

1 reference

based on heuristic

inferred from title

author

Ravindra Venkatramani

series ordinal

1

1 reference

26 June 2018

author name string

Ravi Radhakrishnan

series ordinal

2

1 reference

26 June 2018

language of work or name

English

0 references

publication date

26 February 2008

1 reference

26 June 2018

published in

Physical Review Letters

1 reference

26 June 2018

volume

100

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26 June 2018

issue

8

1 reference

26 June 2018

page(s)

088102

1 reference

26 June 2018

All-atom empirical potential for molecular modeling and dynamics studies of proteins

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Regulation of DNA repair fidelity by molecular checkpoints: "gates" in DNA polymerase beta's substrate selection

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Relating protein motion to catalysis

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Scalable molecular dynamics with NAMD

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Computer simulations of protein functions: searching for the molecular origin of the replication fidelity of DNA polymerases

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

DNA polymerase fidelity: kinetics, structure, and checkpoints

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Dependence of DNA polymerase replication rate on external forces: a model based on molecular dynamics simulations

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Mechanical processes in biochemistry

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Orchestration of cooperative events in DNA synthesis and repair mechanism unraveled by transition path sampling of DNA polymerase beta's closing

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

The pentacovalent phosphorus intermediate of a phosphoryl transfer reaction

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Ten years of tension: single-molecule DNA mechanics

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Replication by a single DNA polymerase of a stretched single-stranded DNA

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Single-molecule studies of the effect of template tension on T7 DNA polymerase activity.

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

An efficient method for sampling the essential subspace of proteins.

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Force production by single kinesin motors.

30 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2276685

Translocation by T7 RNA polymerase: a sensitively poised Brownian ratchet

13 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18352668

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1103/PHYSREVLETT.100.088102

1 reference

26 June 2018

PMC publication ID

2276685

1 reference

26 June 2018

PubMed publication ID

18352668

1 reference

26 June 2018