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Chapter 20 Expression, Reconstitution, and Structure of an Archaeal RNA Degrading Exosome
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Europe PubMed Central
PubMed publication ID
19161854
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19161854%20AND%20SRC:MED&resulttype=core&format=json
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20 January 2020
title
Expression, reconstitution, and structure of an archaeal RNA degrading exosome
(English)
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Europe PubMed Central
PubMed publication ID
19161854
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20 January 2020
author
Esben Lorentzen
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1
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Europe PubMed Central
PubMed publication ID
19161854
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20 January 2020
author name string
Elena Conti
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2
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Europe PubMed Central
PubMed publication ID
19161854
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20 January 2020
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1 January 2008
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19161854
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20 January 2020
published in
Methods in Enzymology
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19161854
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20 January 2020
volume
447
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Europe PubMed Central
PubMed publication ID
19161854
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20 January 2020
page(s)
417-435
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PubMed publication ID
19161854
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20 January 2020
cites work
Functions of the exosome in rRNA, snoRNA and snRNA synthesis
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reference URL
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7 January 2021
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The 3' to 5' degradation of yeast mRNAs is a general mechanism for mRNA turnover that requires the SKI2 DEVH box protein and 3' to 5' exonucleases of the exosome complex
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
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inferred from DOI database lookup
Ski7p G protein interacts with the exosome and the Ski complex for 3'-to-5' mRNA decay in yeast
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
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Identification of a regulated pathway for nuclear pre-mRNA turnover.
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7 January 2021
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Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3' end formation
1 reference
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Crossref
reference URL
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7 January 2021
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Structural framework for the mechanism of archaeal exosomes in RNA processing
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7 January 2021
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The exosome: a macromolecular cage for controlled RNA degradation
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A viral cleavage site cassette: identification of amino acid sequences required for tobacco etch virus polyprotein processing
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Nonsense-mediated mRNA decay: molecular insights and mechanistic variations across species
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7 January 2021
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inferred from DOI database lookup
A single subunit, Dis3, is essentially responsible for yeast exosome core activity
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
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Coot: model-building tools for molecular graphics
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7 January 2021
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An exosome-like complex in Sulfolobus solfataricus
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7 January 2021
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Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex.
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Dissecting the interaction network of multiprotein complexes by pairwise coexpression of subunits in E. coli
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Crystal structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis and implications for its quaternary structure and tRNA binding
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7 January 2021
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RNA-quality control by the exosome
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Crossref
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7 January 2021
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Improved methods for building protein models in electron density maps and the location of errors in these models
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Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
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7 January 2021
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Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
based on heuristic
inferred from DOI database lookup
RNA degradation by the exosome is promoted by a nuclear polyadenylation complex
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
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inferred from DOI database lookup
Reconstitution, activities, and structure of the eukaryotic RNA exosome
1 reference
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reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
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inferred from DOI database lookup
Structure of the active subunit of the yeast exosome core, Rrp44: diverse modes of substrate recruitment in the RNase II nuclease family
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
based on heuristic
inferred from DOI database lookup
RNA channelling by the archaeal exosome
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
based on heuristic
inferred from DOI database lookup
The exosome and the proteasome: nano-compartments for degradation
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
based on heuristic
inferred from DOI database lookup
Structural basis of 3' end RNA recognition and exoribonucleolytic cleavage by an exosome RNase PH core
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
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inferred from DOI database lookup
The archaeal exosome core is a hexameric ring structure with three catalytic subunits
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
based on heuristic
inferred from DOI database lookup
The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
based on heuristic
inferred from DOI database lookup
Insights into the mechanism of progressive RNA degradation by the archaeal exosome
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
based on heuristic
inferred from DOI database lookup
Structural and biochemical characterization of the yeast exosome component Rrp40
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
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RNA polyadenylation in Archaea: not observed in Haloferax while the exosome polynucleotidylates RNA in Sulfolobus
1 reference
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Crossref
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https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
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Co-expression of protein complexes in prokaryotic and eukaryotic hosts: experimental procedures, database tracking and case studies.
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Crossref
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7 January 2021
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Likelihood-enhanced fast rotation functions
1 reference
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Crossref
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7 January 2021
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A duplicated fold is the structural basis for polynucleotide phosphorylase catalytic activity, processivity, and regulation
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
based on heuristic
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Exosome-mediated recognition and degradation of mRNAs lacking a termination codon
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
based on heuristic
inferred from DOI database lookup
Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
based on heuristic
inferred from DOI database lookup
The exosome and RNA quality control in the nucleus
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
A new yeast poly(A) polymerase complex involved in RNA quality control
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Characterization of native and reconstituted exosome complexes from the hyperthermophilic archaeon Sulfolobus solfataricus
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Domain interactions within the Ski2/3/8 complex and between the Ski complex and Ski7p
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
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7 January 2021
based on heuristic
inferred from DOI database lookup
Structural basis for processivity and single-strand specificity of RNase II.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2808%2902220-9
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0076-6879(08)02220-9
1 reference
stated in
Europe PubMed Central
PubMed publication ID
19161854
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19161854%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
PubMed publication ID
19161854
1 reference
stated in
Europe PubMed Central
PubMed publication ID
19161854
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19161854%20AND%20SRC:MED&resulttype=core&format=json
retrieved
20 January 2020
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