(Q58887658)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17011794%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

title

How should gaps be treated in parsimony? A comparison of approaches using simulation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17011794%20AND%20SRC:MED&resulttype=core&format=json

Erratum to “How should gaps be treated in parsimony? A comparison of approaches using simulation” [Mol. Phylogenet. Evol. 42 (2007) 817–826]

20 December 2019

corrigendum / erratum

0 references

author

T. Heath Ogden

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17011794%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

author name string

Michael S Rosenberg

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17011794%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

publication date

22 August 2006

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17011794%20AND%20SRC:MED&resulttype=core&format=json

Molecular Phylogenetics and Evolution

20 December 2019

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17011794%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

volume

42

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17011794%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17011794%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

page(s)

817-826

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17011794%20AND%20SRC:MED&resulttype=core&format=json

The its Region of Nuclear Ribosomal DNA: A Valuable Source of Evidence on Angiosperm Phylogeny

20 December 2019

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

A Phylogenetic Analysis of Epilobium (Onagraceae) Based on Nuclear Ribosomal DNA Sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Reconstructing large regions of an ancestral mammalian genome in silico

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Aligning multiple genomic sequences with the threaded blockset aligner

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Initial sequence of the chimpanzee genome and comparison with the human genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Crayfish Molecular Systematics: Using a Combination of Procedures to Estimate Phylogeny

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Simultaneous statistical multiple alignment and phylogeny reconstruction.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

The Same Duplication Accounts for the PgiC Genes in Clarkia xantiana and C. lewisii (Onagraceae)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Stretch coding and block coding: two new strategies to represent questionably aligned DNA sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Predicted secondary structure for 28S and 18S rRNA from Ichneumonoidea (Insecta: Hymenoptera: Apocrita): impact on sequence alignment and phylogeny estimation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Evolution of a noncoding region of the chloroplast genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Molecular systematics of the fern genus Hymenophyllum s.l. (Hymenophyllaceae) based on chloroplastic coding and noncoding regions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Using evolutionary Expectation Maximization to estimate indel rates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Evolutionary HMMs: a Bayesian approach to multiple alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Evolution and phylogenetic utility of alignment gaps within intron sequences of three nuclear genes in bumble bees (Bombus).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

MCALIGN: stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

The Evolution of Non-Coding Chloroplast DNA and Its Application in Plant Systematics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Group II introns as phylogenetic tools: structure, function, and evolutionary constraints

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Sequence alignments and pair hidden Markov models using evolutionary history

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Internal Transcribed Spacer Sequences from 38 Recognized Species of Suillus sensu lato: Phylogenetic and Taxonomic Implications

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

An algorithm for progressive multiple alignment of sequences with insertions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Bayesian coestimation of phylogeny and sequence alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Phylogenetic analyses of "higher" Hamamelididae based on plastid sequence data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Models of sequence evolution for DNA sequences containing gaps

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Statistical alignment based on fragment insertion and deletion models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

A "Long Indel" model for evolutionary sequence alignment.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

A probabilistic treatment of phylogeny and sequence alignment.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Incorporating information from length-mutational events into phylogenetic analysis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Multiple Sequence Alignment Accuracy and Phylogenetic Inference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Patterns and rates of indel evolution in processed pseudogenes from humans and murids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

An empirical test of the treatment of indels during optimization alignment based on the phylogeny of the genus Secale (Poaceae).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Benchmarking tools for the alignment of functional noncoding DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Joint Bayesian Estimation of Alignment and Phylogeny

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Evolutionary models for insertions and deletions in a probabilistic modeling framework

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Evolutionary distance estimation and fidelity of pair wise sequence alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Multiple sequence alignment accuracy and evolutionary distance estimation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Heterogeneity of nucleotide frequencies among evolutionary lineages and phylogenetic inference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Incorporation, relative homoplasy, and effect of gap characters in sequence-based phylogenetic analyses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

An evolutionary model for maximum likelihood alignment of DNA sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

Inching toward reality: an improved likelihood model of sequence evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

The virtues of gaps: xenarthran (Edentate) monophyly supported by a unique deletion in alpha A-crystallin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

OPTIMIZATION ALIGNMENT: THE END OF MULTIPLE SEQUENCE ALIGNMENT IN PHYLOGENETICS?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

GapCoder automates the use of indel characters in phylogenetic analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2006.07.021

10.1016/J.YMPEV.2006.07.021

7 January 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17011794%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

1 reference