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Characteristics of Chi distribution on different bacterial genomes
scientific article published on 01 November 1999
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Europe PubMed Central
PubMed publication ID
10672998
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10672998%20AND%20SRC:MED&resulttype=core&format=json
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4 November 2019
title
Characteristics of Chi distribution on different bacterial genomes
(English)
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Europe PubMed Central
PubMed publication ID
10672998
reference URL
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4 November 2019
author
Meriem El Karoui
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1
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Europe PubMed Central
PubMed publication ID
10672998
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4 November 2019
Alexandra Gruss
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4
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Europe PubMed Central
PubMed publication ID
10672998
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4 November 2019
author name string
V Biaudet
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2
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PubMed publication ID
10672998
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4 November 2019
S Schbath
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3
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PubMed publication ID
10672998
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4 November 2019
publication date
1 November 1999
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Europe PubMed Central
PubMed publication ID
10672998
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10672998%20AND%20SRC:MED&resulttype=core&format=json
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4 November 2019
published in
Research in Microbiology
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stated in
Europe PubMed Central
PubMed publication ID
10672998
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10672998%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
volume
150
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stated in
Europe PubMed Central
PubMed publication ID
10672998
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10672998%20AND%20SRC:MED&resulttype=core&format=json
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4 November 2019
issue
9-10
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Europe PubMed Central
PubMed publication ID
10672998
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10672998%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
page(s)
579-587
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Europe PubMed Central
PubMed publication ID
10672998
reference URL
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retrieved
4 November 2019
cites work
The recombination hot spot chi is a regulatory element that switches the polarity of DNA degradation by the RecBCD enzyme
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Molecular cloning of a rat chromosome putative recombinogenic sequence homologous to the hepatitis B virus encapsidation signal
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Conserved domains in DNA repair proteins and evolution of repair systems
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DNA replication triggered by double-stranded breaks in E. coli: dependence on homologous recombination functions
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Dna2 of Saccharomyces cerevisiae possesses a single-stranded DNA-specific endonuclease activity that is able to act on double-stranded DNA in the presence of ATP.
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Correlation of chi orientation with transcription indicates a fundamental relationship between recombination and transcription.
1 reference
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Codon usage can explain GT-rich islands surrounding Chi sites on the Escherichia coli genome
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A 7-base-pair sequence protects DNA from exonucleolytic degradation in Lactococcus lactis.
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The complete genome sequence of Escherichia coli K-12
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Low-redundancy sequencing of the entire Lactococcus lactis IL1403 genome
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Linguistics of nucleotide sequences: morphology and comparison of vocabularies
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When polymerases collide: replication and the transcriptional organization of the E. coli chromosome
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DNA Sequence and Analysis of 136 Kilobases of the Escherichia coli Genome: Organizational Symmetry around the Origin of Replication
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A five-nucleotide sequence protects DNA from exonucleolytic degradation by AddAB, the RecBCD analogue of Bacillus subtilis
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Recombinational hotspot activity of chi-like sequences
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7 January 2021
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Cutting of chi-like sequences by the RecBCD enzyme of Escherichia coli.
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Genomics, Chi sites and codons: 'islands of preferred DNA pairing' are oceans of ORFs.
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Crossref
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https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
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7 January 2021
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Chi sequence protects against RecBCD degradation of DNA in vivo
1 reference
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7 January 2021
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An eleven-base-pair sequence determines the specificity of DNA uptake in Haemophilus transformation
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Homologous pairing in vitro stimulated by the recombination Hotspot, Chi
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Crossref
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7 January 2021
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The recombination hotspot chi is a regulatory sequence that acts by attenuating the nuclease activity of the E. coli RecBCD enzyme
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Crossref
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https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
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7 January 2021
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Identification of the lactococcal exonuclease/recombinase and its modulation by the putative Chi sequence.
1 reference
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Crossref
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7 January 2021
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Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
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Sequence and uptake specificity of cloned sonicated fragments of Haemophilus influenzae DNA
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Expression of the ATP-dependent deoxyribonuclease of Bacillus subtilis is under competence-mediated control
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7 January 2021
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Replacement of the lysine residue in the consensus ATP-binding sequence of the AddA subunit of AddAB drastically affects chromosomal recombination in transformation and transduction of Bacillus subtilis.
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7 January 2021
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The C terminus of the AddA subunit of the Bacillus subtilis ATP-dependent DNase is required for the ATP-dependent exonuclease activity but not for the helicase activity
1 reference
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Crossref
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Clustering of chi sequence in Escherichia coli genome.
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Crossref
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Dinucleotide relative abundance extremes: a genomic signature
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The mechanism of the chi-cos interaction in RecA-RecBC-mediated recombination in phage lambda
1 reference
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Crossref
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7 January 2021
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The complete genome sequence of the gram-positive bacterium Bacillus subtilis
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Crossref
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https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
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Collapse and repair of replication forks in Escherichia coli
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Crossref
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based on heuristic
inferred from DOI database lookup
Insertion of a short Alu sequence into the hMSH2 gene following a double cross over next to sequences with chi homology
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
A model for the mechanism of precise integration of a microinjected transgene.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
DNA double-strand breaks caused by replication arrest
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
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7 January 2021
based on heuristic
inferred from DOI database lookup
Strand compositional asymmetry in bacterial and large viral genomes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Chi and the RecBC D enzyme of Escherichia coli
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Chi-dependent DNA strand cleavage by RecBC enzyme.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Oligonucleotide bias in Bacillus subtilis: general trends and taxonomic comparisons
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Skewed oligomers and origins of replication.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Exceptional motifs in different Markov chain models for a statistical analysis of DNA sequences
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of chi hotspots of generalized recombination
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Frequency and distribution of DNA uptake signal sequences in the Haemophilus influenzae Rd genome
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identification of the Chi site of Haemophilus influenzae as several sequences related to the Escherichia coli Chi site
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Rec-mediated recombinational hot spot activity in bacteriophage lambda. III. Chi mutations are site-mutations stimulating rec-mediated recombination
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
RecBC enzyme nicking at Chi sites during DNA unwinding: location and orientation-dependence of the cutting
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
RecBCD enzyme is altered upon cutting DNA at a chi recombination hotspot
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The recombination hot spot chi is embedded within islands of preferred DNA pairing sequences in the E. coli genome.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identification of the nuclease active site in the multifunctional RecBCD enzyme by creation of a chimeric enzyme
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
The 30-kDa C-terminal domain of the RecB protein is critical for the nuclease activity, but not the helicase activity, of the RecBCD enzyme from Escherichia coli
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0923-2508%2899%2900132-1
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1016/S0923-2508(99)00132-1
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10672998
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10672998%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
PubMed publication ID
10672998
1 reference
stated in
Europe PubMed Central
PubMed publication ID
10672998
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10672998%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 November 2019
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