(Q64944018)

English

Dynamic conformational states of DNA containing T.T or BrdU.T mispaired bases: wobble H-bond pairing versus cross-strand inter-atomic contacts.

scientific article published on 18 February 2005

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

1 July 2019

http://europepmc.org/abstract/MED/15719239

Dynamic conformational states of DNA containing T.T or BrdU.T mispaired bases: wobble H-bond pairing versus cross-strand inter-atomic contacts. (English)

1 reference

Europe PubMed Central

PubMed publication ID

1 July 2019

http://europepmc.org/abstract/MED/15719239

author name string

Tsvetan G Gantchev

1

1 reference

Europe PubMed Central

PubMed publication ID

1 July 2019

http://europepmc.org/abstract/MED/15719239

Sylvain Cecchini

2

1 reference

Europe PubMed Central

PubMed publication ID

1 July 2019

http://europepmc.org/abstract/MED/15719239

Darel J Hunting

3

1 reference

Europe PubMed Central

PubMed publication ID

1 July 2019

http://europepmc.org/abstract/MED/15719239

publication date

18 February 2005

1 reference

Europe PubMed Central

PubMed publication ID

1 July 2019

http://europepmc.org/abstract/MED/15719239

Journal of Molecular Modeling

1 reference

Europe PubMed Central

PubMed publication ID

1 July 2019

http://europepmc.org/abstract/MED/15719239

11

1 reference

Europe PubMed Central

PubMed publication ID

1 July 2019

http://europepmc.org/abstract/MED/15719239

2

1 reference

Europe PubMed Central

PubMed publication ID

1 July 2019

http://europepmc.org/abstract/MED/15719239

141-159

1 reference

Europe PubMed Central

PubMed publication ID

1 July 2019

http://europepmc.org/abstract/MED/15719239

https://scigraph.springernature.com/pub.10.1007/s00894-005-0238-9

0 references

Helical parameters, fluctuations, alternative hydrogen bonding, and bending in oligonucleotides containing a mistmatched base-pair by NOESY distance restrained and distance free molecular dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Helix geometry, hydration, and G.A mismatch in a B-DNA decamer

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution structure of an oncogenic DNA duplex, the K-ras gene and the sequence containing a central C.A or A.G mismatch as a function of pH: nuclear magnetic resonance and molecular dynamics studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Force field dependence of NMR-Based, restrained molecular dynamics DNA structure calculations including an analysis of the influence of residual dipolar coupling restraints

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural characterisation of the bromouracil.guanine base pair mismatch in a Z-DNA fragment

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pyrimidine.pyrimidine base-pair mismatches in DNA. A nuclear magnetic resonance study of T.T pairing at neutral pH and C.C pairing at acidic pH in dodecanucleotide duplexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Single-strand-specific radiosensitization of DNA by bromodeoxyuridine

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear magnetic resonance and circular dichroism studies of a duplex--single-stranded hairpin loop equilibrium for the oligodeoxyribonucleotide sequence d(CGCGATTCGCG).

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural differences in the NOE-derived structure of G-T mismatched DNA relative to normal DNA are correlated with differences in (13)C relaxation-based internal dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The solution structure of an oligonucleotide duplex containing a 2'-deoxyadenosine-3-(2-hydroxyethyl)- 2'-deoxyuridine base pair determined by NMR and molecular dynamics studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thymine-methyl/pi interaction implicated in the sequence-dependent deformability of DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure, dynamics, and thermodynamics of mismatched DNA oligonucleotide duplexes d(CCCAGGG)2 and d(CCCTGGG)2.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The pH dependent configurations of the C.A mispair in DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Optimised parameters for A-DNA and B-DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ionized and wobble base-pairing for bromouracil-guanine in equilibrium under physiological conditions. A nuclear magnetic resonance study on an oligonucleotide containing a bromouracil-guanine base-pair as a function of pH.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of an alternating-B DNA helix and its relationship to A-tract DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution Structure of two Mismatches A . A and T . T in the K-ras Gene Context by Nuclear Magnetic Resonance and Molecular Dynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformational states of a TT mismatch from molecular dynamics simulation of duplex d (CGCGATTCGCG)

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR study of G.A and A.A pairing in (dGCGAATAAGCG)2

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new method for introducing double-strand breaks into cellular DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modification of the melting properties of duplex DNA by attachment of a GC-rich DNA sequence as determined by denaturing gradient gel electrophoresis

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Defining the structure of irregular nucleic acids: conventions and principles

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-resolution structure of a DNA helix containing mismatched base pairs.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular mechanics and dynamics of an abasic frameshift in DNA and comparison to NMR data

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Site-specific dynamics in DNA: experiments

1 reference

https://pubmed.ncbi.nlm.nih.gov/15719239

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00894-005-0238-9

1 reference

Europe PubMed Central

PubMed publication ID

1 July 2019

http://europepmc.org/abstract/MED/15719239

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 July 2019

http://europepmc.org/abstract/MED/15719239

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